Panicum virgatum (switchgrass): 120671974
Help
Entry
120671974 CDS
T07260
Name
(RefSeq) probable dual-specificity RNA methyltransferase RlmN
KO
K06941
23S rRNA (adenine2503-C2)-methyltransferase [EC:
2.1.1.192
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120671974
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.192 23S rRNA (adenine2503-C2)-methyltransferase
120671974
Ribosome biogenesis [BR:
pvir03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
120671974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
RlmN_N
Fer4_12
Ferritin
PI3K_p85B
Radical_SAM_2
Motif
Other DBs
NCBI-GeneID:
120671974
NCBI-ProteinID:
XP_039808188
LinkDB
All DBs
Position
5N:complement(71951642..71954086)
Genome browser
AA seq
402 aa
AA seq
DB search
MAAAPPHVRAAPLARALCARASATAAAAVPPKPQSQANSCRALLGLSETDLRQLALDLGQ
QSYRGKQLHDLLYKSRAKQIQEFNHVPKAFREALLGAGWTVGRSPVHHAVTASDGTAKIL
LKLEDNRLIETVGIPVNDDNKGSSRLTACVSSQVGCPLRCSFCATGKGGFARNLRPHEIV
EQVLAIEEMFKHRVTNVVFMGMGEPMLNLKSVLEAHRCFNKELKIGQRMMTISTVGVPNT
IKMLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLGALMDDCKSYFLETGRRVSFEYT
LLAGTNDEREHAEELAELLRTCGGGYHVNLIPYNPIEGSEYKRPYRKVVQAFVDALEARK
ITVSVRQTRGLDANAACGQLRNEFQKNPLLESSTSEPNLAPL
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgccgccgcacgtccgcgcagcccctctcgcgcgcgccctctgcgcgcgc
gcctccgccaccgccgccgccgccgtgccgcccaagcctcagtctcaggcgaattcttgc
cgcgcgctgctcggcctctccgagactgacctccgccagctcgccctcgacctcggccag
caaagctacagggggaagcagctgcacgacctcctctacaagtccagggccaagcaaatc
caagaattcaaccacgtgcccaaggcgttccgggaggcgttgctcggcgctggctggact
gtcggccgctcgccagtgcaccatgccgtgaccgcctcggatggcacggccaagatactt
ctcaagttggaggataaccggttgatcgagacagtagggattcctgtcaatgatgacaac
aaaggatcttctaggctcactgcctgtgtttcatcgcaggtcggctgccccttgcgttgc
tcattttgtgccacgggcaagggagggttcgctaggaaccttcgaccacatgagattgtt
gaacaggtgttggccatcgaggagatgttcaaacacagggtcacaaatgttgtgttcatg
gggatgggtgagcccatgttgaacctcaagtcagttctagaagcacaccgatgtttcaat
aaggaactgaaaattgggcaaaggatgatgacaatctctacagtaggtgttcctaacaca
ataaaaatgctagcatctcacaagcttcagtcaacacttgcagtgagcctgcatgcccca
aatcagaagctacgggaaacaattgttcctagcgcaaagtcttaccccttgggagcacta
atggatgactgcaagagctacttcctcgaaactggacgcagggtatccttcgagtacact
ctgctagctgggaccaatgatgaaagggagcatgccgaagaacttgcagaattgcttcgc
acatgtggaggtggttatcatgtgaacctaattccctataacccaattgaaggttctgaa
tacaagaggccatacagaaaagtggttcaagcgtttgttgatgcattagaagcaaggaag
ataactgtcagtgttagacagacccgggggctagatgctaacgcagcctgtggtcagctg
agaaatgaattccagaagaatccgcttcttgaatcttcaacctcagagcccaatctcgca
cctttatga
DBGET
integrated database retrieval system
