KEGG   Panicum virgatum (switchgrass): 120672022
Entry
120672022         CDS       T07260                                 
Name
(RefSeq) autophagy-related protein 18d-like
  KO
K22991  WD repeat-containing protein 45
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pvir04131]
    120672022
Membrane trafficking [BR:pvir04131]
 Autophagy
  Other autophagy associated proteins
   Others
    120672022
SSDB
Motif
Pfam: PROPPIN Beta-prop_THOC3 BCAS3_WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_IFT140_2nd ANAPC4_WD40 Beta-prop_RSE1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_2nd WDR55 CFAP251_N Beta-prop_EML PEP5_VPS11_N Beta-prop_WDR36-Utp21_2nd Beta-prop_HPS5 WD40_Gbeta Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_ACSF4 Beta-prop_WDR19_2nd Beta-prop_IFT80_2nd DUF6817
Other DBs
NCBI-GeneID: 120672022
NCBI-ProteinID: XP_039808241
LinkDB
Position
5N:complement(6483284..6492277)
AA seq 417 aa
MSSQVSTSRGLHPPGKLGTFESPHVWPLSAPPGHPEAGRGDDQDVRLLSVAWNQDCGCFA
AGTSNGFRIFNCEPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNVQYPPNKVMIWD
DHQSRCIGEFAFRSDVRAVKLAKDYIVIVLERKIYVYNFTDLKLLYQIDTLSNPKGLCCL
SHHSNTSVLACPGVHQGHVRVEHFGLKMTKTIPAHDSHISCMALTMDGLLLATASTKGTL
IRIFNTMDGTRLQEVRRGLDKAEIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS
NEQRTLEGPWMDHQNSSSSIDPLVQTNTGSNASSSLSFMRGILPKYFSSEWSFAQFHLPE
VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFLKSDTPPFRTSST
NT seq 1254 nt   +upstreamnt  +downstreamnt
atgagctcacaagtctccacatcacgggggttgcatcccccaggcaagcttgggacattc
gagtcccctcatgtctggccgctgtcggcacctccaggccatcccgaagcaggtcgtggt
gatgaccaggatgtcaggctgttgtcggttgcttggaatcaggattgcggatgctttgct
gctggtactagcaatgggttcaggatcttcaactgcgagcctttcaaggaaactttcagg
agggatcttaagagtggtgggtttgggattgtcgagatgctgtttcgttgcaacatactt
gctcttgtaggtgggggctccaatgtgcagtatccgccaaacaaggtgatgatctgggat
gatcaccagagccgttgcattggagagtttgccttccgttctgatgtccgggctgtaaaa
ttggcaaaggactacatcgttattgtcctcgagaggaagatatatgtctacaacttcacc
gatttgaagctgctgtaccaaattgacaccctgtcaaatcccaaaggactttgctgcctc
tcccatcattccaatacttcagtgttggcatgccctggggtgcaccaggggcatgttcgg
gtggagcattttgggctgaagatgacgaagacaatcccggctcatgattcacacatctct
tgcatggcactgacaatggatgggctcctactggcaaccgcaagcacgaagggcactttg
atcagaatattcaacacaatggatggcactcgcctacaagaggtacgcagaggacttgac
aaagcagaaatatatagcattgcactgtcgcccaatgtgcagtggttggcagtgtccagt
gacaaaggaactgttcacattttctctctaagagtcagagttgctggggaggatgcaagc
aatgagcaacgcactcttgaaggtccatggatggaccaccagaactcttccagttctatt
gatcctcttgttcagacgaacactgggtccaatgcgagttcatcactgtctttcatgaga
gggatcttgcctaagtatttcagttcagaatggtcatttgctcagttccatttaccagaa
gtcacacgctacatagtagcctttggtgcacagaacactgtaatgatggttggcctggat
ggcagcttctacaggtgcagctttgaccaagtgaatggagggcagatgttgcagaaggaa
tatttccggtttttgaagtctgacaccccacctttcaggacgtcatccacctga

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