Panicum virgatum (switchgrass): 120672138
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Entry
120672138 CDS
T07260
Name
(RefSeq) pre-mRNA-splicing factor 38-like
KO
K12849
pre-mRNA-splicing factor 38A
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120672138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120672138
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120672138
Complex C
U4/U6.U5 tri-SnRNP related factors
120672138
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
120672138
NCBI-ProteinID:
XP_039808372
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All DBs
Position
2K:complement(23024481..23029823)
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AA seq
393 aa
AA seq
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MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT
YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTGTVADVYQYL
EPLYNDYRKIRHKLSDGQFTLTHVDEFIDELLTKDYSCDTALPRIQKRWVLEASGTLEPR
RSALEDDFEEEEEDKEEEQPMEIDEPNGREKDNHRGRSPARERDRDRDRDRDRKHERHHR
DRDYDRDRDYDRDYGRGRERDRDRDRERDRNRDRDRDRHRLRDDDYGRDRDRDRERDGRE
RERRDRDRGRHRSRSRSRDRRDRDREDGEYRRRRGRGSASPRGRGEDGVTREEPKRRKEK
KEKKGEGNAPDPTDPEIIEMNKLRASLGLKPLK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgcacggaccccctcgcgaagagcatccacgggacgaacccgcagaacctg
gtggagaagattgtgcgctccaagatctatcagagcacctactggaaggagcagtgcttc
ggcctcaccgccgagacgctggtcgacaaggccatggagctcgaccacaccggcgggacc
tacggcgggaaccgcaagcccaccccgttcctctgcctcgcgctcaagatgctgcagatc
cagcccgacaaggacatcgtcgtcgagttcatcaagaacgaggactataaatatgttcgc
gttcttggggccttctacctgcgcctcaccggcaccgtcgccgatgtctaccagtatctg
gagccgctctacaatgactaccgcaagatcaggcacaagctcagcgatggacagttcaca
cttacccatgttgatgagttcatcgatgagttgctgaccaaggactactcctgtgataca
gccctgccccgtatccagaaaagatgggttcttgaagcatctggaactctagaaccaaga
agaagtgcacttgaggatgattttgaggaagaagaggaagacaaggaggaagaacaacct
atggaaatcgatgagcctaatggccgtgaaaaggataatcatcgtggaaggagccctgca
agggaacgggatagggatcgggaccgagaccgggacaggaaacatgaaaggcaccacagg
gaccgagattatgatagagaccgggactatgatagagactatgggagaggacgggaaaga
gaccgagatagagatcgtgaaagggacagaaacagggatagggatcgtgatcgtcaccgc
ctgcgagatgatgattacggccgagacagggaccgagaccgtgagagggatggtagggaa
agggaacgccgagacagagaccgtggtaggcacaggagccgctcaaggagcagggatcga
cgagacagagaccgtgaagatggagagtaccgcaggaggcgtggtcgtggcagtgctagt
cctcgagggcgtggcgaggatggcgtcacaagagaggaaccgaagaggaggaaggaaaag
aaagagaagaagggtgaagggaatgctccggatccgactgatcctgagatcatagaaatg
aacaagctccgggcctctctagggttgaaaccgcttaagtag
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