Panicum virgatum (switchgrass): 120672259
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Entry
120672259 CDS
T07260
Name
(RefSeq) AP-4 complex subunit epsilon-like
KO
K12400
AP-4 complex subunit epsilon-1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120672259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120672259
Membrane trafficking [BR:
pvir04131
]
Endosome - Golgi transport
Others
AP-4 complex
120672259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
HEAT_2
Cnd1
INTS1_R4
HEAT
HEAT_EZ
PDS5
NPHI_C
Motif
Other DBs
NCBI-GeneID:
120672259
NCBI-ProteinID:
XP_039808510
LinkDB
All DBs
Position
5N:complement(68192402..68199369)
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AA seq
970 aa
AA seq
DB search
MEQLRTIGRELAMGSQGGWGQSKEFLDLVKSIGEARSKAEEDRIIARELEHLKRRLADPD
VPRRKMKELLLRLVYAEMLGHDASFGHIHAVKMTHDESLPLKRTGYLAVALFLDERHDLV
ILVVNTIQKDLRSDNYLVVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMA
LHRFYQRSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLYDLILEEPNSYKDLVVSFVNIL
KQVAERRLPTSYDYHQMPAPFIQIKLLKILAVLGSGDKQASGHMYTVLGDIFRKGDTASN
IGNAILYECICCISSIFPNPKMLEAAAETTSKFLKSDSHNLKYMGIDALGRLIKINPDIA
EEHQLAVIDCLEDPDDTLKRKTFELLYKMTKSTNIEVIVDRMIEYMINITDHHYKTEIAS
RCVELAEQFAPSNQWFIQTMNKVFEHAGDLVNIRVAHNLMRLIAEGFGVEDEGADSQLRS
SAVDSYLRIVGEPKLPSSFLQIICWVLGEYGTADGKYSASYIIGKLCDVAEAHLTDDTVK
AYAISAILKIFAFEISVGRKIDMLPECQTLVDELSASHSTDLQQRAYELQALLGLDKRAV
ESVMPADASCEDIEVDRNLSFLNSYVQQALENGAAPYIPESERSGVMSVGSYRSHEQQEA
SAHTLRFEAYEMPKPSLALATSQVSMSTPPTDLVPVPDPGYHKEDHQTSRSQPSGDAISG
EFGVKLRLDGVQKKWGRPTYSSSTPSSSASSQQATNGASHSDGGGLTSSQARESSYGSKR
QQGTEISAEKQRLAASLFGSAAAKADRKAQASRKASKESASADKATVSSAAPQPIKEQVI
PAAPPPDLLDLGDEPVSSSPPSADPFSQLEGLLGPASATPVVSGALATSTSKAPDLMSIF
SDDVPTGATSESSDPALGDVNLMSSLKGATAAAAKKGPSLQDALQKDATARQVGVTPTGN
NPNLFKDLLG
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctgcggacgatcgggcgggagctggcgatggggtcgcagggcgggtggggg
cagtccaaggagttcctcgacctcgtcaagtccatcggcgaggcgcgctccaaggcggag
gaggaccgcatcatcgcgcgcgagctcgagcacctcaagcgccgcctcgccgatcccgac
gtgccccgccgcaagatgaaggagctcctcctccgcctcgtctacgctgagatgctcggc
cacgacgcctccttcggtcacatccacgccgtcaagatgacccacgacgagtcgctcccg
ctcaagcggaccgggtacctcgccgtcgcgctcttcctcgacgagcggcacgacctcgtc
atcctcgtggtcaacaccatccagaaggacctcaggtccgacaactacctcgtcgtctgc
gcagcactcaccgccgcgtgccgcctcattggcgaggaggccatccccgccgtgctgcca
caagttgtagagctgcttgcacaccctaaggaggctgtgaggaagaaggccgtcatggcg
ctgcaccgattctaccagcgatccccctcctctgtttcccaccttgtctccaacttccgc
aagaggctctgtgacaacgatcctggcgtgatgggtgcaaccctgtgccccctctatgac
ctgatcttggaggaaccaaattcatacaaggatttggttgttagttttgttaacatcctc
aaacaagttgcagagaggaggcttcctacttcctatgattatcaccagatgcctgcaccg
tttattcagataaaactattgaagatacttgctgtgctgggtagcggtgataaacaagca
agtggacatatgtacacggtattgggtgatatattcaggaagggtgacactgcaagcaat
attggaaatgctatactgtatgaatgcatatgctgcatttcatccattttcccaaaccct
aagatgctagaggctgcagctgaaacgacatcaaagtttctgaagagtgatagccataat
cttaagtacatgggtattgatgctcttggccggctaataaaaataaatccagatattgcg
gaagagcaccaattggccgttattgattgtttagaggaccctgatgacactttgaagcgc
aagacttttgagcttctttataagatgacaaagtcaacaaatattgaagtgattgttgat
agaatgattgagtacatgatcaacataactgatcatcattacaagacagaaatcgcatca
cgttgtgttgaacttgcagagcaatttgcacctagcaatcagtggttcatccagaccatg
aataaagtcttcgagcatgctggagatcttgtcaacataagagtggcacacaatttgatg
cggcttattgctgaaggctttggtgtggaggatgaaggtgctgacagtcaactaagatca
tcagctgtagattcctatctccgcatcgtgggagagccaaagcttccttcttctttcctg
cagataatatgctgggttttgggagaatatggaacggcagatgggaagtattcagcttct
tatatcattggaaagttgtgtgatgttgcagaggcccatctcacagatgacactgtcaag
gcgtatgcaatctcggcgattttgaagatatttgcatttgaaatttctgtcggaaggaag
attgatatgctgcctgagtgccaaacattggtagatgaattgtcagcttcgcattcaaca
gatttgcagcaacgggcatatgaactacaggctttactaggtttggacaaacgtgctgtt
gaaagtgttatgcccgcagatgcaagctgtgaagatattgaggttgacagaaacctctca
tttctaaacagttatgtgcagcaagccttggaaaatggtgcggccccttacattccggag
agcgaacgctcaggtgtgatgagtgttggcagctacagaagccacgaacaacaggaagca
tctgcccatactcttagatttgaggcctatgagatgcctaaaccttcgctggcactagca
acctcacaagtcagcatgtccacaccacctactgacctggttccagttccagatcctggt
taccataaggaagaccaccaaacatcaaggtcccagccttcaggtgatgcgatttctggt
gagtttggtgtcaaacttcgtcttgatggggttcaaaagaaatggggaaggccaacctat
tcctcttctacaccttcaagctcagcgtctagccaacaagcaaccaacggggcctctcat
tctgatgggggaggcttaaccagttcgcaggcgcgggagtcctcctatggttcaaagaga
cagcagggcacagaaatttcagcagaaaagcaacggcttgctgcttcgctttttggttca
gcagctgctaaagctgacaggaaagcacaagcttctcgaaaggcttcaaaggaaagtgca
tcagcggacaaagcaactgtgagtagtgcagcaccccaacccattaaagagcaagtaatc
cccgctgccccaccgcctgatctgctggatctgggtgatgagccagtctcatcaagtcct
ccgtcagctgaccctttctcacagctagaggggcttcttggaccagcatcggccactccg
gtggtttctggagctctggctaccagcacttccaaagcaccagatcttatgtcgatcttc
tcagatgatgtaccaactggagcgaccagtgaatcctctgatcctgctctaggtgatgtt
aatttgatgagctcgctcaaaggagcaactgcagcggctgcaaagaagggtcctagcctt
caagatgccttgcaaaaggatgcgactgcacgacaagtaggtgtgacaccaacagggaac
aatcccaatcttttcaaggacttgctaggctag
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