KEGG   Panicum virgatum (switchgrass): 120672314
Entry
120672314         CDS       T07260                                 
Name
(RefSeq) ubiquitin receptor RAD23b-like isoform X1
  KO
K10839  UV excision repair protein RAD23
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03420  Nucleotide excision repair
pvir04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    120672314
  09124 Replication and repair
   03420 Nucleotide excision repair
    120672314
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:pvir03051]
    120672314
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120672314
Proteasome [BR:pvir03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    120672314
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      120672314
SSDB
Motif
Pfam: UBA XPC-binding UBA_7 UBA_3 CUE UBA_RAD5A
Other DBs
NCBI-GeneID: 120672314
NCBI-ProteinID: XP_039808610
LinkDB
Position
1K:6235152..6238553
AA seq 302 aa
MLDYLLSLQSKISGSSGASSAQPSSSSETSQPPPVDPLRQAPQPPVAEATTSQPERSPAQ
YVIRAPSNTYDNAASNLLSGSNIDTMINQLMEMGGGSWDRDKVQRALRAAYNNPERAVEY
LYSGIPVTAEVAVPVGALGGNTTDQPLTGEANLAGIPNSAPLNLFPQGGSNAGGGPLEFL
RNNQQFQALREMVQTNPQILQPMLQELSKQNPQILRLIQENHAEFLQLINEPFEDGEGDF
LEQPEQDEMPLTINVTPEEQEAIGRLESMGFERARVIEAFFACDRNEELAANYLLEHAGE
ED
NT seq 909 nt   +upstreamnt  +downstreamnt
atgcttgattatctgctatctttgcagagcaaaatatctggttcaagtggagcctcatct
gcccagccctcaagcagttctgaaaccagtcagccacctcctgtagatcctctacgacaa
gctccacaaccccctgtggcagaagctacaacttctcagcctgaaagatctcctgcacag
tatgtaatccgggccccttcaaacacatatgacaatgcagcatcaaatctactatcagga
agcaatattgacacaatgattaaccagctaatggagatgggtggaggcagttgggacaga
gataaagtccaaagggctcttcgtgctgcttacaacaacccggaacgtgctgttgaatac
ctgtactctggtattccagtaacagctgaagttgctgttccagttggtgctctaggagga
aacacaactgatcaacctcttacaggggaagccaatctcgctggaattccaaacagtgct
ccattaaatctttttccgcaggggggttccaatgctggaggtgggccacttgagtttctt
agaaacaaccaacagtttcaagcacttagggaaatggtccaaacaaatccacaaatcttg
cagcctatgctccaggaattgagcaagcagaatcctcaaattctaaggttgattcaggag
aatcatgctgagttccttcagttaataaatgagccctttgaagatggcgagggggacttc
ttagaacaacctgagcaggatgaaatgcctcttactatcaatgttacaccagaggagcag
gaggccattggacggcttgaatccatggggtttgagagagcacgtgtcattgaggcattc
tttgcctgcgacaggaatgaggagctagctgcaaactatcttcttgagcatgctggtgag
gaagattga

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