Panicum virgatum (switchgrass): 120672316
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Entry
120672316 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase RGLG5-like
KO
K16280
E3 ubiquitin-protein ligase RGLG [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120672316
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120672316
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120672316
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Copine
zf-C3HC4_3
vWA-TerF-like
zf-C3HC4
zf-RING_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
120672316
NCBI-ProteinID:
XP_039808582
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All DBs
Position
5N:complement(67766209..67770776)
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AA seq
463 aa
AA seq
DB search
MGGSSSRSSPRDGSSHGRGYGRSRSFGQPAGPPPPQYGGYYCQDPSAGYYAAPQQGGGYA
APYPAPAYQPPAAAPAPPAAKPRQLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGI
DFTKSNEWTGKFSFHGRSLHHISSSPNPYEQAISIVGQTLSKFDEDNLIPCFGFGDASTH
DQDVFCFYPVERPCNGFSEALHRYREIVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVL
LIIADGQVTRSVDTASGQLSSQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNI
PARAFDNFQFVNFSEIMSKNMPQSRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPD
RVPLPPPAGIDDAYSYSSKSFSKPTTYPQSSSSSSPYPHYENPHSATPAAPTSTYDNQVC
PICLVNPKDMAFGCGHQTCCDCGQSLQSCPICRIPITTRIKLY
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atggggggaagctcgtcgaggagcagcccacgggacgggagcagccacgggcgggggtac
ggccgctcgcgctcctttggccagccggcggggccgccgccgccgcagtatggaggctac
tactgccaggacccgagcgcgggctactacgccgcgccgcagcagggaggagggtacgcc
gccccgtacccggccccggcgtaccagccccccgccgctgccccggcgccgccggccgcg
aagccgcggcagctggaccgccggtactcgcggattgccgacgattaccactcggtggat
caggttactgatgccctagctcaagctgggcttgaatcgtcgaatcttattgtcggcatt
gatttcacaaagagcaatgagtggacagggaaattctccttccatggacgtagtttacat
cacattagcagctcaccaaatccttatgaacaagccatctcaattgtagggcagacacta
tcaaaatttgatgaagacaatttgatcccatgctttggatttggagatgcatcaacacat
gatcaagatgtcttctgtttttatcctgtcgagagaccatgcaatggtttctcagaagct
ctgcatcgatatagggaaattgtaccacatttgcgcttagctggaccaacatcctttgca
ccaattattgagatggctatgaccattgtggagcaaagtggtggccaataccatgttcta
ttgataattgccgatgggcaggttacgcggagtgtagatactgcatctggacagctaagt
tcgcaagagcagaagactgttgatgccattgtgaaggccagtgaactgcctttgtccatc
gtgttagtaggagttggtgatggcccctgggacatgatgaaggaatttgatgacaacatt
cctgctcgagcttttgacaatttccaatttgtgaatttctcggagataatgtccaagaac
atgccacaatcaaggaaagaggctgcatttgctctttctgcattgatggagataccacaa
caatataaagcaaccgtggaattaggaattttaggtcgtcgctctttcaagtctcctgac
agggttcctctgccgcctcctgctggaatcgatgatgcttattcctattcgtctaaaagc
tttagtaagccaaccacctacccacagagttcatcatcctcatcaccgtatcctcactac
gaaaatccacatagcgccaccccagctgcgcctacgtccacttacgacaaccaggtctgc
cctatctgccttgtgaaccccaaagacatggcatttggctgtggacaccagacctgctgt
gactgtggacagagtctccagtcgtgcccgatctgtcgcattcccatcaccacaaggata
aagctatactag
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