KEGG   Panicum virgatum (switchgrass): 120672354
Entry
120672354         CDS       T07260                                 
Name
(RefSeq) protein decapping 5-like isoform X1
  KO
K18749  protein LSM14
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120672354
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120672354
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 120672354
NCBI-ProteinID: XP_039808637
LinkDB
Position
5N:complement(11028250..11033822)
AA seq 636 aa
MAAEAPPSAASASSVSAPRPPAASGSGGGAAASPESYIGSLISLTSKSEIRYEGVLYNIN
TEESSIGLRNVRSFGTEGRKKDGMQIPASDKVYEYILFRGSDIKDLQVKSSPPPPPPPQA
ASLHNDPAIIQQSHYSQPASTSSLPSAGGTVVPDLSSQAAQYGLQRPSFQSILPLYQPGN
TPWGSSVAPQAGNASTLSVPSMYWQGYYGHSSGLPPHLQPPPFLQPTPGLSVPQNLQYPS
LPSGLQKLSELQPSLMPPVTSQGSSSGILPATTAPASATLLAPESSKPLLPNMGSLFAPP
VTSLGATFPFPSQPTSTAETSAMSQNLNSLGSSKAAVLPGSTLAYQTVSQSVSSTVAPSS
SSQVEMPVPLLAPSGQLLQNTASMLSSSHSMQTPLQMGSKESKPVEPKAKVAEPLLPDPL
LPDPPSRALPENKEPILPLPKQTPQKYNGSGSHNHHNFRGRGRGRGSAFSQSVTAFTEEF
DFTAMNEKFNKDEVWGHLGKKSQSRDKDGEMGGDVFDEDLEVVETENPELAVKPVYVKDD
FFDSLSSGTFGRGGGPNGRGKFSERRRVDTETFGEFPRHRQPYRGGARGYRGGGRSRGGY
YGGRGYGNIGQGGYGNMGTGGPGNSYPHRGGAYGRD
NT seq 1911 nt   +upstreamnt  +downstreamnt
atggcggctgaagcgccaccgtcggcggcgtctgcctcctccgtgtcggccccgcggccg
ccggccgcgtccggctccggtggcggggcggcggcgtccccggagtcgtacatcgggagc
ctcatcagcctgacctccaagagcgagatcaggtacgagggcgtcctctacaacatcaac
accgaagagtccagcatcggcctgcgcaacgtgcggtcatttgggactgaaggcaggaag
aaagatggaatgcagattcctgctagcgacaaagtttatgagtacatcctctttcgggga
agtgatatcaaggatctgcaagttaagtcatctccaccaccaccaccgccaccacaagca
gcttccctgcacaacgatcctgccataatccagcagtcacattattcccaaccagcatca
acttcaagtttgccttcagctgggggtacagttgtaccagacctcagctcccaggcagct
caatatgggcttcagaggccaagttttcagagtattcttccgctgtatcaaccagggaac
actccatggggatcttcagtggcgcctcaggcaggaaatgcttccacactttcagttccc
tcaatgtattggcaaggatactatgggcattcaagtggactgccacctcatttgcagcca
cctccttttcttcagcccacaccaggattgtcggttcctcagaatctccaatatccttct
ttgccatctgggctgcaaaagctgtcggaactccaaccctcattgatgccacctgttact
agtcaaggttcttcatcaggtatcctgcctgctacaacagctcctgcttctgctacctta
ttagctccagaaagttcaaagcctcttctgccgaacatgggatcgttgtttgctcctcct
gtgacatctcttggtgccacttttccttttccaagccagccaacttccacggctgaaact
agtgcaatgtcacagaacttaaattctttgggtagcagcaaggctgctgttcttccaggc
tcaacactggcataccaaactgtatctcagtctgtttcttcgactgttgccccatctagc
tcgtcccaagtggagatgcctgtgcctttgttagcaccatcaggtcagctattgcagaac
actgcatccatgctttcatcctcgcactccatgcagacacctttacagatgggcagcaaa
gaatcaaagccagttgagcctaaggcaaaagttgcagaaccactgctacctgaccctttg
ctacctgatccaccatcacgtgctctgcctgaaaataaggagcctatattaccattgccg
aaacaaacgcctcaaaagtacaacggatctggttcacacaaccaccacaacttcaggggc
cgtggaaggggtagaggaagtgcgttttcacagtctgtgacagcatttactgaagaattt
gatttcacggccatgaatgagaagttcaacaaagacgaagtctggggtcatcttggtaag
aaatcccagtcaagggataaggatggtgagatgggaggtgatgtttttgatgaagatttg
gaggttgtggaaacagaaaacccagagttggctgtcaagcctgtttatgtcaaggacgac
tttttcgattccctctctagtggaacatttggacgtggaggagggccaaatggaaggggc
aagttttcagaaaggcggagagttgacacagagacgtttggtgagtttccaaggcatcgg
cagccctatcgtggtggtgcccgtggttaccgtggtggtggccgttcccgtggtgggtac
tatggtggcagaggctacgggaacattgggcagggtggctatggaaacatgggcacaggt
ggccctggaaattcgtatcctcaccgtggtggggcgtatgggagagattga

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