Panicum virgatum (switchgrass): 120672419
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Entry
120672419 CDS
T07260
Name
(RefSeq) small nuclear ribonucleoprotein Sm D2-like
KO
K11096
small nuclear ribonucleoprotein D2
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120672419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120672419
03032 DNA replication proteins [BR:
pvir03032
]
120672419
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
Sm proteins
120672419
U2 snRNP components
120672419
Complex B
U1 snRNP components
120672419
U4/U6.U5 tri-snRNP components
120672419
Complex C
U2 snRNP components
120672419
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
120672419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Rad21_Rec8_N
Motif
Other DBs
NCBI-GeneID:
120672419
NCBI-ProteinID:
XP_039808741
LinkDB
All DBs
Position
5N:complement(71688722..71691086)
Genome browser
AA seq
104 aa
AA seq
DB search
MAEDANGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
REMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
NT seq
315 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggatgccaatggaaagaaggaggaggaggagttcagcacaggccctctgtca
gtgctgatgatgagcgtcaagaacaatacccaggttcttatcaactgccggaacaacaag
aagttacttggtcgtgtgagggcatttgatcggcattgcaacatggttcttgagaatgtt
agggagatgtggactgagataccgaagactggtaaaggcaagaagaaggctcttccggtg
aacaaagacaggttcataagcaagatgttcctccgtggggattcagtcatcattgttctc
aggaacccgaaatga
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