KEGG   Panicum virgatum (switchgrass): 120672419
Entry
120672419         CDS       T07260                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D2-like
  KO
K11096  small nuclear ribonucleoprotein D2
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120672419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120672419
   03032 DNA replication proteins [BR:pvir03032]
    120672419
Spliceosome [BR:pvir03041]
 Complex A
  U1 snRNP components
   Sm proteins
    120672419
  U2 snRNP components
    120672419
 Complex B
  U1 snRNP components
    120672419
  U4/U6.U5 tri-snRNP components
    120672419
 Complex C
  U2 snRNP components
    120672419
DNA replication proteins [BR:pvir03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     120672419
SSDB
Motif
Pfam: LSM Hfq Rad21_Rec8_N
Other DBs
NCBI-GeneID: 120672419
NCBI-ProteinID: XP_039808741
LinkDB
Position
5N:complement(71688722..71691086)
AA seq 104 aa
MAEDANGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
REMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
NT seq 315 nt   +upstreamnt  +downstreamnt
atggcggaggatgccaatggaaagaaggaggaggaggagttcagcacaggccctctgtca
gtgctgatgatgagcgtcaagaacaatacccaggttcttatcaactgccggaacaacaag
aagttacttggtcgtgtgagggcatttgatcggcattgcaacatggttcttgagaatgtt
agggagatgtggactgagataccgaagactggtaaaggcaagaagaaggctcttccggtg
aacaaagacaggttcataagcaagatgttcctccgtggggattcagtcatcattgttctc
aggaacccgaaatga

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