Panicum virgatum (switchgrass): 120672425
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Entry
120672425 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 4-like isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120672425
00071 Fatty acid degradation
120672425
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120672425
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120672425
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120672425
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120672425
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120672425
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120672425
Exosomal proteins of breast cancer cells
120672425
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Motif
Pfam:
AMP-binding
Motif
Other DBs
NCBI-GeneID:
120672425
NCBI-ProteinID:
XP_039808749
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Position
5N:49627583..49636100
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AA seq
655 aa
AA seq
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MQNVVEVEPGHPAADGRPSVGPTYRSAFACDGFPPPVPGLNSCYDIFRMAVEKYPDNRML
GHREIVDGKAGAYVWKTYREVFDIASKIGNSIRSCGLAKGSRCGIYGANCPEWIITMEAC
NAHGIYCVPLYDTLGAGAVEFILCHAEVEIAFAEEKKIELLLKTLPKSNEFLKMIVSFGK
VTQEQKEEASKYGLSIYSWDEFLSLAADQEFDLPVKEKADICTIMYTSGTTGDPKGVLIS
NASIICLIAGVDRLLNCVNEKLAEIDVYMSYLPLAHIFDRVVEELFIFHGASIGFWRGDV
KLLVEDIGVLKPTIFCAVPRVLDRIFSGLQAKISSGGFIKSTLFNLAYKFKQFRMMRGAK
HDEAATICDKVVFSKVKEGLGGNVRLILSGAAPLATHVEEYLRVVTCAHVLQGYGLTETC
AGSFVSLPNQMSMIGTVGPPVPNIDVRLESVPEMDYDALASTARGEICIKGETLFSGYCK
REDLTKEVLVDGWFHTGDIGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGLVSA
IDSVWIYGNSFESFLVAVANPNKEALESWAAANGISGDFESLCQNPKAKEYILGELSRIG
KDKKLKGFEFIKDVHLEPVPFDMERDLITPTYKKKRPQLLKYYQGVIDHMYKSAK
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacgtggtagaggtcgagccaggccacccggccgccgatggccgcccctccgtg
ggccccacctaccggagcgccttcgcctgcgacgggttcccgccccccgtccccgggctg
aacagctgctacgacatcttccggatggcagtggaaaagtatccagacaacagaatgctt
ggccaccgtgagattgttgatggaaaggctggcgcatacgtctggaagacatacagggag
gtttttgacattgcaagcaaaattggtaactctattaggagctgtggacttgcaaagggt
agtcgttgcggtatatatggtgctaattgtcctgaatggattatcacaatggaggcttgc
aatgcccatggaatctactgtgtcccattatatgacacgctcggagctggtgctgtagag
tttattctatgccacgcagaagttgagattgcttttgctgaggaaaagaaaattgagctg
ctcttgaagaccttacccaagtcaaatgagttcttgaaaatgattgtgagttttgggaag
gtaactcaagaacaaaaggaagaagcttccaaatatgggctgtcaatctactcatgggat
gaatttctgtccttggcagctgaccaagaatttgatcttccagtcaaggagaaggcagat
atatgcactataatgtatactagtggaactactggtgacccaaaaggagtactgatatcc
aatgcaagcattatttgtctcatcgcaggtgtggaccggctacttaactgtgtaaatgag
aagctggcagaaatcgatgtttacatgtcttaccttcctcttgcgcacatctttgatcgt
gttgtggaagagctgtttattttccatggtgcctctattggattctggcgtggggatgtt
aagctgctagttgaagatattggtgtgctgaaaccaacaatcttttgtgctgtcccacgt
gttcttgatcggatattttctggactacaagctaaaatttcctctggtggttttataaag
agtacactattcaatcttgcttacaaattcaagcagtttagaatgatgagaggagccaag
cacgatgaagctgctaccatatgtgacaaagtagtttttagtaaggtgaaagagggtctc
ggtggcaatgttagacttattttatctggagctgctccacttgctacccatgttgaagaa
tacttgcgagtggtgacgtgcgcacatgtcctacaaggatacggtctcacggaaacttgt
gctggatcttttgtctcgttgccaaatcagatgtccatgataggaactgttggtccccca
gtgccaaacattgatgttcgtctggagtctgtcccagaaatggattatgatgcacttgcg
agcacagctcgtggagaaatctgcatcaagggagaaacattattctcaggatactgcaag
cgtgaagaccttacaaaggaggtcttggttgatgggtggttccatactggtgacattggt
gagtggcaacctgatggaagtatgaaaatcatagatcgcaaaaagaatatattcaaactt
tcacagggagaatacgtggcagttgaaaatttggagaatatttatggccttgtttctgct
atagactcggtatggatatatgggaacagctttgaatccttccttgttgctgtggccaat
cccaacaaggaggctcttgagagttgggctgcagcaaatggaataagtggtgattttgaa
tccttgtgccagaatccaaaagcaaaagaatacattttaggagaactgtcaagaatagga
aaagataagaagctcaaaggttttgaattcatcaaagatgtacaccttgaaccagtgccc
tttgatatggaacgcgacttgatcactccaacatacaaaaagaaacggccacagctgctc
aagtactaccagggcgtgatcgaccacatgtacaaaagtgccaagtga
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