KEGG   Panicum virgatum (switchgrass): 120672437
Entry
120672437         CDS       T07260                                 
Name
(RefSeq) polyubiquitin
  KO
K08770  ubiquitin B/C
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120672437
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120672437
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120672437
Ubiquitin system [BR:pvir04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   120672437
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   120672437
  Exosomal proteins of other body fluids (saliva and urine)
   120672437
  Exosomal proteins of colorectal cancer cells
   120672437
  Exosomal proteins of bladder cancer cells
   120672437
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 Dsc3_N DUF2604 Ubiquitin_5 UBL_UBAC1
Other DBs
NCBI-GeneID: 120672437
NCBI-ProteinID: XP_039808767
LinkDB
Position
5N:complement(10343531..10345724)
AA seq 305 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
LRGGQ
NT seq 918 nt   +upstreamnt  +downstreamnt
atgcagatctttgttaagaccctcaccggcaagaccatcaccctcgaggttgagtcctcg
gacaccattgacaacgtcaaggctaagatccaggacaaggaaggcatccccccggaccag
cagcggctcatctttgctggaaagcagctcgaggatggccgcactcttgcggactacaac
atccagaaggagtccaccctccacttggtgctcaggcttaggggaggcatgcagatcttc
gtcaagaccctcactggcaagaccatcacgcttgaggtcgagtcttctgacaccatcgac
aacgtgaaggccaagatccaggacaaggagggcatccccccagaccagcagcgtctcatc
tttgctggcaagcagctcgaggatggccgtaccctcgctgactacaatatccagaaggag
tcgaccctccaccttgtgcttaggctcaggggtggaatgcagatcttcgtcaagactctc
actggcaagaccatcactcttgaggtcgagtcatcggacacgattgacaatgtgaaggcc
aagatccaggacaaggagggcattcccccggaccagcagcgtctgatctttgctggcaag
cagctggaggatggccgcacccttgctgactacaacattcagaaggaatccacccttcac
cttgtgctcaggctcaggggtggtatgcagatctttgtgaagaccctcaccggcaagacc
attaccctggaagttgagtcgtctgacactatcgacaatgtgaaggcgaagatccaggac
aaggagggcatccccccggatcagcagcgtctgatttttgctggtaagcagctggaggat
ggccgcaccctggcggactacaacatccagaaggagtccaccctccacctggtgctccgc
ctgcgtggtggccagtaa

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