Panicum virgatum (switchgrass): 120672487
Help
Entry
120672487 CDS
T07260
Name
(RefSeq) protein HASTY 1-like
KO
K14289
exportin-5
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120672487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120672487
03036 Chromosome and associated proteins [BR:
pvir03036
]
120672487
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
120672487
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
120672487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exportin-5
Xpo1
bPH_4
Motif
Other DBs
NCBI-GeneID:
120672487
NCBI-ProteinID:
XP_039808841
LinkDB
All DBs
Position
5N:complement(24291188..24318033)
Genome browser
AA seq
1200 aa
AA seq
DB search
MAADPAAAAAASAAAAISAVMDWRSAPDARAAAFAYLESVKSGDVRALASTSFLLVQKDQ
ASEIRLHGFKMLQHLVRLRWEELSAAERNEFANLTINLISDVVGPHEMWALKSQTAALVA
EVVRREGVALWNTLLPSIVSLSNSGPIEAELVAMILRWLPEDITVHNEDLEGDRRRSLLR
GLTESLPQILPLLYSLLEKHFVAALSEHSKQQIDLAKQHAGTVTSVLNAVNAYAEWAPVT
DLAKHGLIHGCGSLLSYSDFRLHACEFFKVICQRKRPVDVAVAEYDAAICNIFQVLMNIS
QQFLTRSGMQPSSIDESEYEFATCVCETMVALGSSNMQCILADGARTFQFLKQMLEYYQH
YKITLHFQSLLFWLVVLREPSKAKSVARVSGDNSTAGISASTGDLSTEKEKKGVSVFVTD
EIYSTILDVSFKRMLKNSGTASSGLLELWSEELEGKSDFCNYRTKLLDLIKITASQRPVI
AAASIVQRINVVFGDANQATKSPQDLDAMEGAQLGLEAVVSAIFDGSVDYGKTDVEMKSQ
LHKIFEGLLQQLLSLKWTEPNLAVIHGHYLDALGPFLRHYPDAVASVVNKLFELLTSLPI
TFQDPSNNSRLARLQICSSFIRISRAADKALLPHMKNIADTMAYLQGEGRLLRGEHNHLC
EAFLVMASSAGIQQQQEVLAWLLEPLNKMWTQVEWQTAYLSDPTGLTNMFADSQFMWSIY
HTVTFFEKALKRSGTKKSTTTPQAPTTTAAPGYLHPISSHLAWILPPLLRLLRCIHALWA
EPFAQSQTREIKAAKSMTVAEQASLLGETGKLTKGQVAPADGLLEVQRDGESKENNIKNW
LRGIRDSGYNVLGLAATLGEAFFRCAEASSVALALMENLQVMEFRHLRQLIHLVIIPFVK
YCPADLWQVWLGSLLQPLFVHCQQALHYSWSSLLHEGRAKVPDSIGNLSGSELKAEVMEE
KLLRDLTREVCSVLWALASPGLNSGLPSLEQLGPSNRMDSLKNLEYFASTSLTGFLMLHV
GTALPALRISVEVFSWTDSDAVTKVIPFCGALIHLAVASNQAELRQFVAKDLFSSIIQGL
SVESNSIMSAELVGLCREIYVYLSDRDPAPRQVLLSLPHIKQEDLLAFDDSLSKTASPKE
QKQHMRSLLLLATGNKLRALAAQKTTNVITNVTTRNRSSSAHHGIAEEDGQIGLATLSST
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaccccgccgctgcggcggctgcctcggcggcggctgcgatctccgccgtg
atggactggcgctccgcccccgacgcccgcgccgccgccttcgcgtacctcgaatcggtt
aagagcggagacgtccgagcattggcaagcacatcatttctcttggtacagaaggatcag
gcatcagagatccgcttgcacgggttcaagatgttgcagcaccttgtgagattgaggtgg
gaggagctcagtgctgcagagcggaatgaatttgctaatttgaccattaatttgatatca
gatgttgttggccctcatgagatgtgggccttgaagagtcaaacagctgctttagtagca
gaggtagttagaagggagggagttgctttgtggaataccttactcccatctattgtttct
ctctctaacagtggtccaatcgaggctgagttagttgccatgattctaaggtggcttcca
gaggatatcactgttcataatgaggatttggagggtgatagacggagatctctgttacgc
ggccttactgaatccctgccacaaatcctgccacttttgtattccctacttgagaaacat
tttgtcgctgctttaagtgagcactcaaagcagcaaatagacttggctaaacaacatgca
gggacagtgacatcagttcttaatgctgtcaatgcatatgctgaatgggctcctgtgaca
gatcttgccaaacatggtttaattcacggatgtgggtccttgctatcttacagtgatttt
cgcctccatgcttgtgagttttttaaagtaatatgtcagagaaaaagacctgtggatgtg
gcagttgctgagtatgatgctgcaatctgcaacatcttccaggtgttgatgaacatttca
caacaatttttgaccagatctggcatgcagcccagttctattgacgaaagcgagtacgag
tttgcaacgtgtgtttgtgagacaatggttgctctgggatcttctaatatgcaatgcata
ctagctgatggagctagaactttccagttcttaaaacaaatgctggagtattaccaacat
tacaagatcacgcttcatttccagtctttattattttggctggtggtattgagagaacca
tcaaaagctaagtctgtcgcacgtgtttctggtgacaattcaactgctggtatttctgca
tcgactggtgatttatcaacagaaaaggagaagaaaggggtgtccgtatttgttaccgat
gaaatatacagtacaattttggatgtttctttcaaaagaatgctcaagaacagtggaact
gcatcttccgggttgttagaactatggagcgaagagcttgaggggaaaagtgacttctgc
aactaccgcaccaaattgttggatctcattaaaatcactgcttcacaaagacctgtgatt
gctgcagcaagcattgtccagagaataaatgttgtttttggagatgctaatcaagcaact
aaatccccccaggatcttgatgcaatggaaggggctcagctggggcttgaagcagttgtc
agtgctatatttgatggctcagttgattatggaaagactgatgtggagatgaaatcccaa
ctgcacaaaatttttgaaggcttacttcagcagcttctttctttaaagtggacagaacct
aaccttgcggttattcatggtcattatctggatgctttgggtcctttcttgagacattat
ccagatgcagttgccagtgttgttaataagctttttgaactgttgacgtctctccccatc
acatttcaggatccatcaaacaattctcgcttagcaaggttgcagatatgttcatcattc
attcgtatatcgagagctgctgataaagctcttctgcctcacatgaagaacattgctgat
acaatggcttaccttcaaggagagggtcgtttactacgtggtgaacataaccatctatgt
gaagcgtttcttgtgatggcatcttctgctgggattcaacagcaacaggaagtccttgct
tggttacttgaacctctaaacaagatgtggactcaagtggaatggcaaactgcatacttg
tctgatcctactggtttgacaaatatgtttgctgatagccaatttatgtggtcaatttat
cacactgttacattctttgaaaaggcactcaagaggagtggaaccaaaaagtctaccaca
actccacaagcacccaccacaacagcagcacctggttatctgcatccaatatcttcacat
ctagcatggattctgccccctctcttaaggctgctgcgatgcatacatgctctctgggct
gagccgtttgctcagtctcagacacgggaaatcaaagcagcaaaaagcatgactgttgcg
gagcaggctagccttctaggagagacaggcaaacttaccaaaggccaggttgcacctgct
gatggattgctggaagttcaaagagatggagaatccaaggaaaacaacataaaaaactgg
ttgcgcgggatccgagacagcgggtacaatgttttaggattggcagctactcttggggaa
gcattctttcgatgcgcagaggcttcctctgtcgcacttgctcttatggagaatttacaa
gttatggagtttcggcatttgcgccaacttatccaccttgttattattccatttgtcaaa
tattgccctgctgatctatggcaagtgtggctagggagccttttgcagccattgtttgtc
cattgtcagcaagctcttcattattcatggtccagtcttcttcatgagggtcgggctaag
gttccagacagcattggtaatctttctgggtcagaactgaaggcagaggtcatggaagag
aagttgctacgtgacttgactcgtgaagtgtgttctgtgctttgggctttagcatcacca
ggcttaaatagtggacttccatccttggaacaacttggaccttccaaccggatggattct
ttgaagaatctggaatattttgcttcaacttctctcactggatttcttatgcttcatgtt
ggcacagctcttcctgcattgagaatatcagttgaagtgtttagttggactgatagtgat
gctgtgactaaagttatccccttttgtggtgcactgattcaccttgctgttgcttcaaac
caggctgagttgaggcagtttgttgcaaaggatttattttcttctataattcagggttta
tctgttgaatcaaattccatcatgagtgccgaacttgttgggctttgtcgggagatatat
gtctatctgtctgatagagatcctgcacctaggcaggttcttctttccctcccacacatc
aagcaggaagatttgctagcgtttgatgactctttgagtaaaactgctagtccgaaagag
caaaagcaacatatgcgaagcttacttctgctggctacagggaacaaattaagagctctt
gctgcccagaagacaactaatgtgattaccaatgttacaactcgaaataggagctcttcg
gcacaccatggaattgctgaagaagatggccaaattggattggccacactatcatcaaca
tga
DBGET
integrated database retrieval system
