Panicum virgatum (switchgrass): 120672510
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Entry
120672510 CDS
T07260
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 3-like
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03020
RNA polymerase
pvir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120672510
09124 Replication and repair
03420 Nucleotide excision repair
120672510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120672510
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120672510
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120672510
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120672510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Motif
Other DBs
NCBI-GeneID:
120672510
NCBI-ProteinID:
XP_039808873
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All DBs
Position
2K:24075204..24086822
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AA seq
327 aa
AA seq
DB search
MDRPAAGASYQRFPRVRIRELRDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIE
VNSSVLNDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFLLSARATDSD
QTLEVTSNDLRSADPKVCPVDQARAYQQALSADFESSAGEHRGILIVKLRRGQELRLRAI
ARKGIGKDHAKWSPAATVTFMYEPDIHINEELMDTLTLDEKISWVESSPTKVFNLDPITK
QVTVCDAEAYTYDDEVIKKAEAMGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITV
LRQKLDAVRLQDDDGDLGELGAHLGGP
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtccggcggccggcgcgtcgtaccagcggttcccccgcgtccggatccgcgag
ctgagggacgactacgccaagttcgagctccgcgacaccgacgccagcatagccaacgcc
ctccgccgcgtcatgatcgccgaggtccccacggtggccatcgacctcgtcgagatcgag
gtcaactcctccgtcctcaacgacgagttcatcgcgcaccgcctggggctcatccccctc
acctccgccgccgccatgcaaatgcgcttctcccgggactgcgacgcctgcgacggcgac
ggctcctgcgagtactgctccgtcgagttcctactctccgcgcgtgccaccgactccgac
cagactctcgaggtcacatccaacgacctgaggtccgccgaccccaaggtctgccccgtc
gaccaggcgcgcgcctaccagcaggcgctcagcgccgacttcgagtccagcgccggggag
cacaggggaatacttattgtaaagctgcgccgggggcaagaactgaggcttcgtgccatt
gctaggaaaggaatcggcaaggaccatgccaaatggtcaccagctgctactgtgactttc
atgtatgagcctgacatacatatcaatgaagaactcatggatacattgacgcttgatgag
aaaataagttgggtcgaaagcagccctacaaaagtatttaaccttgatcctattaccaaa
caggtaacggtgtgtgatgctgaggcatacacctatgacgatgaggtgatcaagaaggcg
gaggccatggggaagccaggcctggtggagatcaacgcgaaggaggacagcttcatcttc
actgtggaaacaactggcgccatcacagcctacgagctgatcatgaacgcgatcacggtc
ctgcggcagaagctggatgctgtccgcctccaggacgacgacggcgaccttggcgagctc
ggcgcccaccttggcggaccttaa
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