Panicum virgatum (switchgrass): 120672523
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Entry
120672523 CDS
T07260
Name
(RefSeq) transcription initiation factor TFIID subunit 12-like isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120672523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120672523
03036 Chromosome and associated proteins [BR:
pvir03036
]
120672523
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120672523
Coactivators
SAGA/TFTC/STAGA complex
120672523
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120672523
STAGA complex
120672523
TFTC complex
120672523
SAGA complex
120672523
SLIK complex
120672523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
PAT1
DUF5827
Piezo_TM25-28
Motif
Other DBs
NCBI-GeneID:
120672523
NCBI-ProteinID:
XP_039808892
LinkDB
All DBs
Position
5N:complement(64506362..64511168)
Genome browser
AA seq
511 aa
AA seq
DB search
MDAPPPSQPDAAAAAAPSSTSASASSAAPPPPNPPASAASAAPSSDSTITTPTPNSGTAA
NPAQTLEAPGPSSVSARPPPPRMRPPYTHLASPITMSSSSSAATTATSSSASVPPSSSAA
PPIPRGGVVVGIPAPRPAQTPAGYTGFVPPPPLAHQFGSMHRGPDLPPPSSSQFRQPSPG
IQNIGMIGSLSASQVRPGIIPGPQQPRPGLPSSTTPIPSGSQMPGSQRTPSHALMRPMTV
SSPAPSPASQQTPQNSTSAFRPQQRPQVPQPRPQQSAPVTLHQQNVISQQQQQQQQQQLP
HNQILQQQQQQKQQQQSSSHQIQQNSAPKNQPQHSQQQAARTPVTMTQKPDSPAIQNTTV
LQSVNTVATDADVSETGTRLLTKRSIHELVAQIDPNEKLDPEVEDVLMDIAEDFVESVTT
FACSLAKHRKSNTLEAKDVLLHAERSWNITLPGFSGDEIKLYKKQHINDIHRERLALIKK
SMATDTRNSAAQAAANQKNQTPKPSAPAASP
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcctccgccctcgcagccggacgccgccgcggcggcggcgccctcctcgacc
tctgcttctgcttcctctgcggcgccaccaccacctaacccaccggcttccgccgcctct
gccgcaccctcttccgactccaccatcaccacccctaccccgaactctggtacggcagca
aatcccgctcaaaccctagaggccccaggccccagctccgtgtccgcgaggccgccgccg
ccgcgaatgaggccaccttacacccacctagcctcgcccattacgatgtcctcgtcctcc
tctgctgccacaactgcgacctcctcctccgcttccgttccgccctcttcctccgcggca
ccccctataccaaggggaggggttgttgtggggatccctgcgccgcgtcccgcacagacg
cccgctggttacaccgggttcgtgccgccgcctccgcttgctcaccagtttggatcgatg
catcgcggccccgacctgcccccgccgtcatcttcacagtttaggcagccttctcctggg
attcaaaatattgggatgattggatccctaagcgcatcccaggtgagaccaggaataata
cccggtccacagcagccaagacctggccttccatcatcaacaactccaattccatctggt
agtcaaatgccaggttcacaaagaaccccctcccatgctttaatgaggccgatgactgtg
agttctcctgctccttcccctgcttcacagcaaactccacaaaattcaacttcagcattt
aggccgcaacagaggccacaagttccacagccaagaccacaacaatctgcacctgtgact
ctgcatcaacagaatgtaatttcacaacagcagcagcagcagcagcagcagcaactaccg
cacaatcaaattttgcagcagcagcagcagcagaagcaacagcaacaaagttcctcgcat
caaattcaacaaaattcagcacccaaaaaccagccacagcattctcagcagcaagctgct
cgcaccccagtgacaatgacacagaagcctgattcacctgctatacaaaatacaactgtt
ttgcaatctgtcaatacagtcgcaactgatgcggatgttagtgaaactggtactcgacta
ctgaccaagagaagcatacatgaattagttgctcagattgatcctaacgaaaagctggat
cctgaagttgaagatgttcttatggacattgcggaagattttgttgagtctgtcactaca
tttgcttgttctttagcaaagcataggaagtcaaacaccctagaagccaaagatgtactc
ctccatgcagaaagaagctggaatatcacgttgccaggcttcagtggggatgaaatcaaa
ctgtacaagaaacagcacataaatgacattcacagggagaggcttgctctgatcaagaag
tcaatggcgactgacacaagaaactctgctgcccaagctgcagctaaccagaaaaatcag
actccaaaaccatctgccccagctgcttccccatga
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