Panicum virgatum (switchgrass): 120672549
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Entry
120672549 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform-like
KO
K11584
serine/threonine-protein phosphatase 2A regulatory subunit B'
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
pvir04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120672549
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120672549
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120672549
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120672549
03036 Chromosome and associated proteins [BR:
pvir03036
]
120672549
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120672549
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120672549
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120672549
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B56
TOF-1-like_helical
Motif
Other DBs
NCBI-GeneID:
120672549
NCBI-ProteinID:
XP_039808960
LinkDB
All DBs
Position
5N:5394426..5397607
Genome browser
AA seq
493 aa
AA seq
DB search
MWKQFIGKLSWKVMKSSSGGGGGAGSPLPKAPPPLPLPRENGAAGKPSASPPSPLAGAGA
EVRSREEAFIQKVNICCAVYDFSDRGKDSPEKERKRQMLMSLVDCIGAAEEPFTETMIAA
CVRMFAANLFRVFPPKVRSGTTASETEEDEPFFDPSWYHLQVVYEFLLRFVTSPLVDAKV
ARKYVDSSFVSKLLDLFDSDDPRERDCLKTILHRIYGKFMGNRPFIRKAVSNIFYRFVFE
TDHHNGIAELLEVFGSVISGFAKPLKEEHKLFLWKALIPLHKPKSVGVYLPQLTYCITQF
IEKEPKLAGTVIRGLLKYWPVTNSQKEMMFLGELEEVLELTDMAEFQKCMVPLFRRIASC
LNSSHFQVAERALFLWNNEHLFDMISQNRQVILPIIYPALERNTRWHWNQSVLNVTMNVR
KMFHDLDERLLLTCQNNFEEEEEKRAATEERRRLMWEQLERSAARGYQQPVIAADVSFPP
PPSSARLVAPTVT
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagcaatttattggcaagctctcgtggaaggtgatgaaatccagctctggcggt
ggcgggggcgcgggctcgccgcttccgaaggcgccgccgccgctgccgttgccgcgggag
aatggggccgcggggaagcccagcgcctcccctccgtcccccttggcgggcgccggggcc
gaggtgaggtccagggaggaggccttcatccagaaggtgaacatttgctgcgccgtgtac
gacttctccgaccggggcaaggactcgccggagaaggagcgcaagcggcagatgctcatg
tccctggtcgactgcattggcgccgccgaggagcccttcacggagacgatgattgcggcg
tgcgtgcgcatgttcgccgccaacctcttcagggtcttcccgcccaaggtccggtcgggc
accacggcttcagagaccgaggaggacgagccgttcttcgatccgtcctggtaccacctg
caagtcgtgtatgagtttctccttcgttttgtgacctctccgcttgtcgatgccaaggta
gctaggaagtatgtcgatagttctttcgtctcgaagctgctcgatctgtttgattccgat
gacccaagggagagggactgcttgaagacgatattgcataggatttatggcaagttcatg
ggaaaccgcccattcatccgcaaggctgtgagcaatatcttttataggtttgtgttcgag
actgatcatcacaatgggatcgctgaactgttggaggtctttggcagtgtaataagtggg
tttgcaaagccattgaaggaggaacataagttgttcttatggaaagcattgattccgctt
cataagccgaaatcagtgggagtttatctgccgcagctgacgtattgcatcacacaattt
attgagaaggaaccaaagcttgccgggactgtgattagaggcctgttgaagtattggcca
gttacgaatagtcagaaggaaatgatgttcttgggcgagttggaggaggtgctggagttg
actgatatggctgaatttcagaagtgcatggttcccttattccggaggattgcgagttgc
ctgaatagctctcattttcaggttgctgagagagctttgttcctatggaacaatgagcac
ctgttcgatatgatctcccaaaaccgtcaagtgatcctgccgataatatatccagctctc
gagcggaacacccgttggcattggaaccaatcggtcctcaatgtaacaatgaacgtgcgg
aaaatgttccatgacttggacgagaggttgctcctaacttgtcagaacaattttgaagag
gaagaagagaagcgagccgcaaccgaggagcggcggaggctcatgtgggagcagctggag
cggagcgccgcgcgtgggtaccagcagccggtgatcgccgcagacgttagctttccgccg
ccgccttcatcagctcgtctggtagccccaactgtgacatga
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