Panicum virgatum (switchgrass): 120672564
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Entry
120672564 CDS
T07260
Name
(RefSeq) serine hydroxymethyltransferase 7-like
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00260
Glycine, serine and threonine metabolism
pvir00460
Cyanoamino acid metabolism
pvir00630
Glyoxylate and dicarboxylate metabolism
pvir00670
One carbon pool by folate
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
pvir01200
Carbon metabolism
pvir01230
Biosynthesis of amino acids
pvir01240
Biosynthesis of cofactors
Module
pvir_M00532
Photorespiration
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
120672564
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
120672564
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
120672564
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
120672564
Enzymes [BR:
pvir01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
120672564
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Motif
Pfam:
SHMT
Beta_elim_lyase
Motif
Other DBs
NCBI-GeneID:
120672564
NCBI-ProteinID:
XP_039808983
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Position
5N:65511974..65516314
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AA seq
591 aa
AA seq
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MDLSRPASSDLSLGLHSHGPSHAHARVHAVAAPLRLFDDTEDAKPERLEGGEAGGEREDD
DDGGDQHFSLLRHSLCVKRPRRAVNGGGGGGGETSSCSSSSAALRPAKRQATGEGCRPDL
ETRRTAVRAWGNQSLAEADPDVHALMELELDRQVRGIELIASENFVCRAVLDALGSHLTN
KYSEGLPGARYYGGNQHIDAIERLCHERAHTAFGLDPACWGVNVQPYSCTSANLGVYTGL
LQPKDRIMGLEPPSGGHVSHGYYTPGGKKVSGASIFFESLSYKVNPQTGLIDYDKVEERA
MDFHPKILICGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFEYCDV
VTSTTHKNLRGPRGGIIFFRKGKKLRKRGGSFSQGDEGEYDFEDKINFGVFPSMQGGPHN
NHIAALAITLKQVATPEYKAYIQQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRTL
GLTGKIFEKVCEACHISINKTPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFELIAEFLI
RATQIASNVLKEHGKLQKEFLRGLQNNKDVVELRNQVEAFASQFAMPGFDV
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggatctctcgcggcccgcatcgtcggacctctcgctcgggctccattctcacggcccc
tcccacgcccacgcccgcgtgcacgcggtcgccgcgccgctgcggctgttcgacgacacg
gaggacgccaagccggagcgtctcgagggcggggaagcaggcggggagagggaggacgac
gacgacgggggagaccagcacttctccctcctccgccactcgctctgcgtcaagcgcccg
cgccgcgcggtcaacggcggtgggggcgggggaggagagacctcctcctgctcgtcctcg
tccgcggcgttgcgccccgccaagcggcaggcgacgggggagggctgccgcccggatctg
gagacccgccgcaccgcggtccgcgcctggggcaaccagtcgctggcggaggccgacccg
gacgtgcatgcgttgatggagctcgagctcgaccgccaggtgcggggcatcgagctcatc
gcgtcggagaacttcgtctgccgcgcggttctcgacgcgcttggcagccacctcaccaac
aagtactccgaggggctcccgggtgctcgctattacggtgggaaccagcacatcgatgcc
atcgagcggctctgccacgagcgcgcccacactgccttcggactcgaccccgcctgctgg
ggcgtcaatgtccagccttactcgtgcacgtccgccaatttgggtgtctacacggggcta
cttcaacccaaggatcgcatcatggggctggaaccaccgtcaggcggccatgttagccat
ggttactacactccgggtgggaagaaggtgtcaggcgcctctattttcttcgagagtttg
tcgtacaaggtgaacccacagactgggttaattgattatgacaaggttgaggagcgggca
atggatttccaccccaaaattctcatctgtggtgggagctcataccccagagagtgggac
tttgcacggatgaggttgattgctgataagtgcggtgcggtgcttatgtgcgacatggcg
catatcagtggtcttgttgcagcaaaggaatgtcgtagccccttcgagtactgtgatgtt
gttacgtcaactacccataagaaccttaggggtcctagaggtggtataatattcttcagg
aaagggaaaaaattaaggaaacgaggtggatctttttctcaaggggatgagggtgaatac
gacttcgaggataagataaattttggtgttttcccttcaatgcaaggagggccccataat
aatcatattgctgccctggcaataaccctgaagcaggtagcaactcctgagtataaagca
tacattcaacaagtcaagaaaaatgcccaggctttggcatcagccttgctcagaagaaaa
tgtagattggttactgggggcacagataatcacttagtgctatgggatctcagaactctt
ggcttgaccggcaagatctttgaaaaggtctgtgaggcatgccacatatctattaacaag
acaccaatttacggggataatggctcgatatcaccaggaggtgttcgaattggaactcct
gcaatgactactagaggttgcttagaggatgatttcgagttgattgctgagttcctcatc
agggcgactcagattgctagcaatgttctaaaagaacatgggaaactacaaaaggagttt
ctacgaggactacagaacaataaggatgttgtagaactccgtaatcaggtcgaggcattt
gcatcacagtttgcgatgccaggttttgatgtatga
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