Panicum virgatum (switchgrass): 120672640
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Entry
120672640 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120672640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120672640
03009 Ribosome biogenesis [BR:
pvir03009
]
120672640
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120672640
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 related factors
120672640
Complex B
120672640
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120672640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6426
Motif
Other DBs
NCBI-GeneID:
120672640
NCBI-ProteinID:
XP_039809082
LinkDB
All DBs
Position
5N:complement(67903736..67908012)
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AA seq
570 aa
AA seq
DB search
MNPYDLRFADPLSYHDRRSDLAVAPIVAPPVLMPAANNFAAAYPPVPAASAGVDYARYGQ
GGRGGGGGGRGGGGGYGGGGGGGYGGGRGGRGRDGLDTLALPKPDFRSLIPFEKNFYVES
PSVQAMSDAEVAQYRRLRDITVEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQS
QGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQ
IQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDLLEAGHTNLRRV
TYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVTI
GSPDLKANHSIQQIVEVISEHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRMD
GWPVLSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLED
YIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQVVNPALETMSKSASSMGGG
NFRSRGRGGFGNRGHMSGSNTFPLGGRRPY
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatacgacctccgcttcgccgaccccttgtcgtaccacgacaggcgcagcgac
ctggccgtggctcctattgtcgctccgccggtcctcatgccggcggcgaacaatttcgcc
gccgcgtatccgcccgtgcctgcggcatccgctggcgtcgattacgcgcgctacgggcag
ggcggcagaggcggtggaggaggaggcagaggcggtggaggcggctatggaggtggcggt
ggaggcggctatggtggcggcagaggagggcgcggcagggacgggcttgacacgctcgcg
ctgcccaagcctgacttccggagcctgataccgtttgagaagaacttctacgtggagtct
ccctccgtgcaggctatgtcggatgcggaggtggcgcagtaccgccgcctacgggatatc
accgtcgagggccgggatgtgcccaagccagtccgatacttccaggaagccaacttccca
gattactgcatgcaagcaattgccaaatctgggtttgtggagccgacacctatccaatct
caaggttggcctatggctctgaagggtagggatctgattggtatcgctcaaacaggctca
gggaaaacattatcttatctgctacctgggttggttcatgttggcgcccagcctcgccta
gagcaaggtgatggcccgattgtattaatcctcgccccaacaagagaacttgctgttcaa
atacaggaagaatccacaaaatttggatcgtattcaagaactagaagcacatgtgtctat
ggtggtgcacctaagggtccacaaatacgcgaccttagaagaggagtggaaattgtcatt
gcgactcctgggcggttgattgatttgctggaagctggtcacacaaacctacgtagagtg
acataccttgtgctggacgaggcagaccggatgttagatatggggtttgagcctcaaatt
cgaaaaattgttgcacagatccggccagacaggcaaaccttatattggagtgccacttgg
cctagagaagttgaagccttagctagacagtttctgcaaaatccttacaaggtaaccata
ggatcacctgaccttaaagctaatcattccatacaacaaattgttgaagtcatttcagag
catgagaagtacccgagactcagtaagctcttgtctgatttaatggatgggagtcgtatc
ttgatatttttccaaacgaaaaaggactgtgataagatcaccaggcaacttagaatggat
gggtggccagtattatctatacatggtgataaggctcaagctgaaagggattatgttctt
gcagagtttaagagtggcaagagtcctataatggctgccacagatgtagcagcacgtggt
cttgatgtgaaggacataaaatgtgtgataaattatgattttccaacaacacttgaagat
tatattcacaggataggtcgaactggccgtgctggtgccagtggaactgcatttactttt
ttcacacatgcaaatgcgaagttctcaaggaacctagtcaagattttgcgggaagctggc
caagtcgtgaatcctgcactagaaaccatgtccaaatctgcgagttcgatgggaggaggc
aatttccggtcgaggggcagaggtgggtttggtaaccggggtcatatgtctggatcaaat
acctttccgttaggaggaagaaggccatactaa
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