Panicum virgatum (switchgrass): 120672645
Help
Entry
120672645 CDS
T07260
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial-like isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120672645
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
120672645
Transfer RNA biogenesis [BR:
pvir03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
120672645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
CheY-binding
Motif
Other DBs
NCBI-GeneID:
120672645
NCBI-ProteinID:
XP_039809102
LinkDB
All DBs
Position
5N:complement(63371531..63378355)
Genome browser
AA seq
783 aa
AA seq
DB search
MGLSPMAARAACGCSSAALAFFGSRPLRRAGRRPAAAFAWGQSSPYGGCRSRLAHSLVDS
VLDELRSRRRVRVSAKIGLQGTKELSDNKIDKRALQKGLLLEFQKDSQRSLLAVVERPDG
KKNWMVTDQNGILSSIKPQQVTYVVPGVMNFDASRIDEFLEKAQDLLDPTVLECAWMELS
EKDKSIMVEEFAEIVYGNKESLESYCAHFLLSRDIVYFVKVESRDCSMYQPRSPPQVEEL
LRRKRAKEEAEKELEEFVHLVKSAKALPMESKPPKSSWLLDEKVRQKIEALQAYAVDACD
DEQRRLAGNILKAMGFTRTSSAALKLLINVGYFPAHVNLDLFKYDVRTMYTEEVLSAAEE
LLVGRPDSDMHIRKDLSTLKVYAIDVDEADELDDALSAIRLPDGRIKVWIHVADPTCMIK
PRGIIDREAMHRGTSIFLPTATFPMFPERLAMNVMSLQQGKQCKSVSVSVTLHPDGSIAE
YTLENSVIKPTYMLTYESATELLYMSLEEEEELRILQEASSICAQWRRSQGSIDTAMIEP
RIKVSNPDDPEPNINLYVEDQANPAMQLVSEMMVLCGEAVAAFGADNNLPLPYRGHPQCN
TAVSAFSHLPDGPARSFANISVLRAAEMDFQKPVPHGILGIPGYVQFTSPIRRYVDLLAH
YQVKAFLRGDSPPYSAGDLEGMTFIASMHVKVARRLHSNSLRYWLLEYLRRQPKGRKYKA
LILKFVKDRMAVLLLVEVGMQVTTIVSRGKVGDEVSVAVDTAHPRDDILSIREVIEDTDD
NEE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggggctgtcgcccatggcggcgcgggcggcgtgcggatgctcatcggcggcgctcgcg
ttcttcggctcccgccccctccgccgcgccggccgccgcccggccgccgctttcgcctgg
ggccagtcctccccctacggcggctgcaggagccgcctggcgcacagcctcgtggattcc
gtcctggatgaactccgctcccggcggcgcgtccgggtctcggcaaagataggattgcag
ggcacaaaagaactgtctgacaataagatagataagagagcattacagaaagggttgctg
cttgaatttcagaaagattcacagagatctttgctagcagttgttgaacggcccgatgga
aagaaaaactggatggtgactgatcagaacggtatcttgtcttcgataaagccccagcag
gttacatatgttgtccctggtgtcatgaattttgacgcttcaagaattgatgaatttctt
gagaaagcgcaagaccttttggacccaacggttttggagtgtgcttggatggagctttct
gagaaggataaatcaataatggttgaggagtttgctgagatagtgtatggtaacaaggag
tctctggaaagctactgtgcacattttttgttatcaagggatatagtctattttgtcaag
gtagagagcagagattgttccatgtaccaacctcgctcaccacctcaggtagaggaactt
ctacggcgaaaacgtgctaaagaggaagccgagaaggaactggaagagtttgtccactta
gtcaagtctgccaaagcattgcctatggagtccaagcctcctaaaagttcatggttgttg
gatgagaaagtaaggcaaaaaatcgaggctcttcaagcatatgcagttgatgcatgtgac
gatgaacaaagaagactagcaggaaatattctcaaagctatggggttcacaaggacgtca
tcagctgctttaaagctccttataaatgtcggttacttccctgcgcatgtcaaccttgat
ctttttaagtacgatgttcgtaccatgtacactgaggaagttttgtctgctgcggaggag
cttctggtgggcagacctgattcagacatgcatatcagaaaggatctttcaactttgaag
gtgtacgcaattgatgtagatgaggctgatgaacttgatgatgcattgagcgcaattagg
ctccctgatggtaggataaaggtctggatacatgttgctgatccaacgtgcatgatcaaa
cctcggggcatcattgatagggaggcaatgcacagaggaacctcaatctttctaccaact
gctacatttccgatgttcccggagaggcttgccatgaatgttatgagcttgcagcagggt
aaacaatgcaaatctgtaagcgtatctgtgactttgcacccagatgggagtattgcagaa
tatactctagagaattcagtcatcaaacctacctacatgttgacatacgagagtgcaact
gaattgctttacatgagcctggaagaagaggaagaactaaggattcttcaagaagcttct
tccatctgtgcacagtggcgtcgtagccagggttcaatagacactgcaatgatagagcca
cgcatcaaggtgtcaaatcctgacgatcctgaaccaaatattaatctatatgttgaagac
caagccaatccggcaatgcagcttgtatctgaaatgatggtactttgtggcgaggcagtg
gctgcttttggcgctgataacaatctccctttgccatacagaggtcacccccagtgtaac
acggcagtgtcagcattttctcatctaccagatgggcctgcaaggagctttgccaatatc
agtgtgctccgcgctgcagaaatggattttcaaaaacctgtaccacatggcatacttggt
attcctggatacgtgcagttcacctctcctattcgaagatatgttgatttgctagctcac
taccaggtaaaagcttttcttagaggtgattctccgccatattcagctggtgacctagaa
ggaatgacatttattgcgagcatgcatgttaaagtagctaggaggcttcatagcaacagc
ttacgttactggttgttggaatacttgaggagacagccaaaagggaggaagtacaaagca
ctgattcttaagtttgttaaggatcgtatggcagttctgcttttggtggaggtcgggatg
caggttacaacaatagtctcgcgtgggaaagtgggagatgaagttagtgttgctgtggac
acggctcatccgcgtgacgatatcttatcaatcagagaggttattgaggataccgatgat
aatgaggagtaa
DBGET
integrated database retrieval system
