Panicum virgatum (switchgrass): 120672673
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Entry
120672673 CDS
T07260
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like
KO
K14948
polypyrimidine tract-binding protein 2
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120672673
Spliceosome [BR:
pvir03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120672673
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
120672673
NCBI-ProteinID:
XP_039809131
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All DBs
Position
5N:complement(46521942..46527834)
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AA seq
553 aa
AA seq
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MASGGQPQFRYTQPPSKVLHLRNLPWDCTPEELVELGTPFGKVVNTKCGVGANRNQAFIE
FADQNQAIAMISYYASSAEPAQVRGKNVYLQYSNRQEIVNTKTTGEGSGNVLLVGMEGVA
PDSVSIDVLHLVFSAFGFVHKIATFEKASGYQALIQFSDAETATSAKAALDGRCIPSYLL
PELDGACTLRISYSAHSVLNVKYQSHRSRDFTNPYLPFLDSAKDGSGADGKKQEPESNIL
LASIENMQYVVTIDVLHEVFSAFGFVQKIAIFEKNGFQALIQYPDIQTAVAAKEALEGHS
IYEGGYCKLHLAFSRHTELNVKINNERGRDYTKGNITPSSNQPSILGPQPLPNVGATIPQ
PNNSVPSAATSAVMPPGVPSPAMPGEPSVALPSHPSSEPHLQTPVAPLGGPPQYPSQAIL
PQQFPGYGSAQAPMLQGQGSQQMSNHVNYQLPPGSAQFMQYLGNGSHLVPNTHGPQAVPF
PGLVGQQLPPGPQMMQAPGYGGLPFSQGPRQPMAQFPMYSNQQFPPGMEPQMMPFSEQGG
RQLPFPPQGPYSR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcttccggtgggcagccgcagttccggtacacgcagccgccatcgaaggtgctccac
ctgcggaacctgccgtgggactgcaccccggaggagttggttgagctggggacccccttc
ggcaaggtcgtcaacaccaaatgcggcgtcggagccaaccgcaaccaggcattcatcgaa
ttcgctgaccaaaatcaagcgatcgccatgatatcatattatgcatcgtcagcagagcca
gcacaggtaagagggaaaaatgtgtatcttcagtactccaatagacaggagattgtcaac
accaagactactggggaaggttcaggcaacgttttgcttgtggggatggagggtgttgcg
cccgattctgtcagcatcgatgttctacacttggtattttctgcttttggatttgttcac
aagattgctacctttgagaaggcatctggttatcaggcattaattcagttttctgatgct
gaaaccgcaacatccgcaaaagctgcactggatggtagatgcattcctagctatttgcta
ccagaactggatggggcctgcactttgagaataagctattcagcacacagtgttctcaat
gtcaagtatcagagccacaggagtagggactttactaacccttaccttcctttcctggat
tctgctaaagatggctctggagcggatgggaaaaagcaggaaccagagagcaatatactt
cttgcatccattgagaacatgcagtatgttgttacaatagacgtgcttcatgaggtcttt
tctgcttttggatttgtacaaaagatagcaatttttgaaaagaatggctttcaagcattg
atccagtatccagacattcaaactgcagttgcagcaaaagaagcattagaagggcacagc
atctatgaaggtggatattgcaagcttcaccttgcattttcacgacatactgagcttaat
gttaagattaacaatgagcgaggtagagattatacaaagggaaacatcactccaagcagt
aatcaaccttccattcttggtcctcagccactaccaaatgttggtgccaccattccacag
ccaaacaatagtgttccttctgcagccaccagtgcagtaatgccaccaggggtgcccagt
ccagcaatgcctggagaaccatcagttgctctaccttcccacccttcgagtgagccacac
ttgcaaactcctgttgctcccctgggtggacctccacagtaccctagccaggctatcctc
cctcagcagttcccaggttatggctcagctcaagctccaatgttgcagggtcagggaagt
caacagatgtccaaccatgtgaattatcaactacctccaggttcagcccagttcatgcag
tatcttggcaatggaagccatctggttccaaacacacatggtccacaagcagtgccgttc
cctggcctcgttgggcagcagctacctccaggtccccagatgatgcaagctccgggttat
ggaggtctgccgttttcacaaggtccacggcaaccgatggcgcagtttccaatgtacagc
aaccagcagttccctccgggtatggagccccagatgatgcccttctctgagcagggaggt
cgacagcttccattccctccgcagggtccctatagtcgttag
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