Panicum virgatum (switchgrass): 120672674
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Entry
120672674 CDS
T07260
Name
(RefSeq) RAN GTPase-activating protein 1-like
KO
K14319
Ran GTPase-activating protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120672674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120672674
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120672674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WPP
LRR_6
LRR_4
LRR_14
LRR_NXF1-5
NPIP
LRR_9
Motif
Other DBs
NCBI-GeneID:
120672674
NCBI-ProteinID:
XP_039809132
LinkDB
All DBs
Position
5N:complement(2874286..2877440)
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AA seq
555 aa
AA seq
DB search
MDSAAQNFQPRTFSIKLWPPSESTRLKLVERMTKNLSTESIFSRKYGLLGKEEAHENAER
IEQLCFGSADEHFKKEPDGDGSSAVQLYAKETSKMMLEVLKKGPRITAELEASVADTPLA
PGDTVLDISGGKRAYIEADEAKQLLSPLTKPGNSYKRICFSNRSFGVDAANVAGSILESV
KNQLTEVDISDFVAGRPEDEALDVMRIFSKALEGSVLRYLNISDNALGEKGVRAFSELLK
SQENLEELYVMNDGISEDAAKALSELIPSTEKLKVLHFHNNMTGDEGAVYVAEMVKRSPN
LESFRCSATRIGSDGGVALSEALGTCTHLKKLDLRDNLFGVDAGIALSKTLPKLPDLVEL
YLSDLNLENKGTVAIVNALKQSAPQLEVLELAGNEINAKAAPDLAECLTAMQSLKKLTLA
ENELKDAGAVIIAKSLEDGHVDLKEFDVSTNMFQRAGARCFARAVANKPGFVQLNIDGNF
ISDEGIDEVKDILKAGKNSLDVLGSLDENEPEGQPDDGDEDDDDDEGAKDDDVEDRLDSK
LQNVQVEQDDEPCLG
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggattcagcagcacaaaatttccaacccaggacattctccatcaagctgtggccaccg
agtgaaagcacacgcctcaagcttgtagagaggatgaccaagaacctgtccactgagtcc
atattttcccggaagtatggacttttgggcaaggaagaggctcatgagaatgctgaaagg
attgaacagctgtgctttggatctgcagatgagcatttcaagaaagaacctgatggtgac
gggagttccgctgtccagctgtacgctaaagaaactagcaagatgatgttggaagttctt
aagaaaggcccaaggatcactgcagaattagaagcgtcggtagctgatacacctctagcg
cctggtgatactgtattagatatatctggtggcaagcgtgcttatatcgaggcagatgaa
gcaaagcaactgctgagtccacttaccaaaccaggaaactcatataaaaggatctgcttt
agcaacaggagctttggtgttgatgctgctaatgttgcaggatctattctcgagtcagtt
aagaatcagcttacagaggtagatatatctgattttgttgcaggaaggccagaggacgaa
gctcttgatgtgatgcgcatattctccaaagcactagagggttctgtactgagatatcta
aacatctccgacaatgcactaggtgagaagggtgtcagggcattcagtgagctcctgaag
tcacaggaaaatctggaggaactctatgtcatgaatgatggcatatcagaggacgctgca
aaagctctttctgagcttattccttcaactgagaagcttaaggttctccacttccacaac
aacatgactggagatgaaggtgctgtgtatgttgctgagatggttaagcggtctccaaat
ctggagagtttcaggtgctcagcaacaaggataggatctgatggtggtgtcgcattgtct
gaggcattagggacatgcacacatctgaagaaactggatcttagggataatttgtttggt
gttgatgcagggattgctctcagcaaaacccttccaaagcttcctgatctcgttgagctt
tacctcagtgacctcaatcttgagaataagggtacagtagcaattgtcaatgccctcaaa
cagtcagcacctcagttggaagtccttgaattggctggaaatgaaataaatgccaaggca
gccccggatttagcagaatgcctaacagccatgcaatcactcaagaagctgaccttggct
gagaatgaactcaaggatgctggtgctgtgattattgcaaaatctttggaagatggtcat
gtagatctgaaggaatttgatgtaagcacaaacatgtttcagagggctggagcacgctgc
tttgcacgggcagttgcaaataaacctggttttgtgcaactgaacatcgatggtaatttc
atctctgatgaagggattgatgaggtgaaagatattctgaaggctggtaagaattcgctg
gatgttttgggctcactggatgagaacgaacctgaggggcagcccgatgacggtgatgag
gatgatgatgacgacgaaggtgccaaggatgatgacgtcgaggacaggctggattcgaag
ctgcagaacgtacaggtggagcaggatgatgaaccatgcttaggctaa
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