Panicum virgatum (switchgrass): 120672765
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Entry
120672765 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120672765
KO
K19027
zinc finger FYVE domain-containing protein 26
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120672765
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120672765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TetR_C_28
Motif
Other DBs
NCBI-GeneID:
120672765
NCBI-ProteinID:
XP_039809270
LinkDB
All DBs
Position
5N:43351203..43386131
Genome browser
AA seq
2435 aa
AA seq
DB search
MAASEREAALLARVAANHLFLAQFEALRAALLSLRRRADPGLAADFLRAVVAAGGRVPGV
LWSAPPACPSPSHLAWLAALELAALPSTPNPEALRLKAEFLILLQPIADDPAVGAETRET
LTRLLDLGVVRLKREVEGGGGEAGAGAEEAAVTEEDLRGLWGVFLDNALVFDALCVGVSR
QIGLDGGFGADVLLLLRQNVQHAHLDAVKTLLAVDDLDGAAGHLRFLCLDHGVEKDEYKL
VISELLRKGWEKASNYGGRWSQLRDRITKMYEAALQSTSPQLVQLFQAILDDIVSEEIED
HNISNTNGMPLPFTKFVETLSLERGTDSDDRTLLDAAIASCKKDLYHYCRLSGKHMLEVV
LETALSSIKREQLQEAVDVVSLFPLLQPLVAVLGWDILKGKTALRRKLMQMFWTSKSQAL
RLQEYSHYRKTDETSCEEYLCDLLCFHLDLACFVSSVNSGRPWNLRNSLLFSQQHQGSDV
NNAEILDPFVENLILERLAVQTPMRVLFDVVPGIKFQDAIELVGMQPLPSTTAAWKRIHD
IELMHMRYALQSVVLALGEMEKCAGDGNECYYHKALSYLREMQNFMEAIKSTPRKIFMVS
IILSLLHMDDSVKLSQAVPSECHVTHECHDNNIESEGKNMVVYFVGLLLDILRHNLQVKG
PDMDHLSSTSLSSAGRQALEWRLKHAKHSIEDLDWRLSVLKRLQPLSERQWSWKEALVLL
RAAPSKLLNVCMQRENYDIGEEAVQRFSLPAEDKASLELAEWVAGAYKRALVEDAVNRAT
DNTNAAQELDILALRAQLGSLTTILLCVDVAATSARSGDMCRFLLDEATSLLSEIFPGSS
PKVGATYWDQVQELAMISVIKRILQRLHDILDLEALPYLQVFFTEMSISSSTESSRVGQK
QRPLGLLHQMIDDAFKGKRQFLSGKLHNVARAIVDEDFDSVYAKEGVNLEKKDVLSSEKG
VVLGHGLRILKQASRSDLASSNVLESSSEHKGSANRYMGPLSTKPSTYLSNFIIYIATIG
DIVDGTDTTHDFNYFSLVYEWPKDLLTRLVFERGSTNAAAKVADTMGVDFVHEIISACVP
PVLPPRTGHGWACIPVVPILSNITSENRSSAIPKSLPPAQGWSAHDSSLSSHQEPLYPLQ
LNLVKHLAQLSSVRAVLACVFGSTILSGDNESSPTYGQDTAQTPEIERSFFEFALEQSER
YPTLNRWIQMQSNLHRVSESSVTDKSESEVSLHQSKGKYSMKRPREPVSDGESELEDIVI
SGNTTSSPLESPKHEDTRLETTTFISFDWENEGPYEKAVERLISEGKLTDALAVSDRCLR
NGASDKLLQLLIEQEERSLGTGQIRAYGSHNLGSDTWQYCLRLRDKKLAAQLALKYLRSW
DLDAASNVITMCMCHLPEKDPMRSKVWHMKQSLQRYGHIMSADEHYTRWQEVEADCEDDP
EGLALRLAAKGAVSAALEVAESASLSIDLRRELQGRQLVKLLTTDPLNGGGPAAASRFLS
TLRDSNDALPVAIGAMKLLPDLRSKQLLVHFFLKRTVGSLSDAEIARLNSWALGLRVLSL
LPLPSQQRCSSLHEHPQLIIEVLLMMKQFQSASLILKEFPALRDDRLIISYAKKAISINV
SSTPRERRLSISATRAKQKKATTPVKTNFVQSFGNFQREARKAFSWVPRDSGTKTPPKDT
PRKRKSSGSGGDRSSWDAMPAVQEEQTPVYPSEGQDRLPFVSAPDEWVLTGDPDKDDTTR
SSHRYETSPDITLFKALISLCSDESVAAKGALELCMTQMKVVLSSQQLPLDASMDNIARA
YHATETYVQALSYAKNLHKKLVGSSDLSSGSERSRDVDDISVDTSSSSAGSQYLDELSDL
LAQADMWLGRAELLQSLLGSGIIASLDDIADKESSTRLRDRLVSDERYSMAVYTCRKCKI
DAFPVWVAWGHALVRMEHYAQARVKFKQALQQYKGDAATVVTEIINTIEGGPPVDVSSVR
SMYEHLAKSAATIFDDSLSADAYLNVLYMPSTFPRSESSRQSRDPMDNQFTSASSYLEDG
PRSNLDSVRYAECIHYLHDYARPQMLAFMFRHGHYAEACSLFFPFNQPTTEGETSVSSVP
WSDPLTTDYGTIDDLCDLCLGYGAMAVLENTIRAVTQSPAYHETPVIQYMNTVLTRICNY
CETHRHFNYLYNFLVLKDDHVPSGLCCIQLFMNSMSQEEALRHLGHAKTHFEEALSVRDR
TMEATKLVLRSARNKSTPGKMTRETIMKYSTRVSYQMDVVKALNNIDGPQWKTSLFGNPT
DPETMRRRCMVVETLAEKHFDLAFRMLHEFDLPAVDIYAGVAASLAERKKGGQLTEFLKN
IRGTIDDDEWDQVLGAAINVYANKHKERPDRLIDMLISNHRKVLACVVCGRLKSAFQIAS
RSGSVADVQYVAHQALHANALPVLDMCKQWLAQYM
NT seq
7308 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtcggagcgggaggccgcgctcctcgcgcgcgtggcggcaaaccacctcttc
ctcgcgcagttcgaggccctgcgcgcggcgctcctcagcctccgtcgccgcgccgacccg
gggctcgccgcggacttcctccgcgcggtcgtcgccgcagggggccgtgtcccgggcgtg
ctctggtccgcgccccccgcctgcccgtccccgtcccacctcgcctggctcgccgcgctc
gagctcgccgccctcccctccacccccaaccccgaggcgctgcgcctcaaggccgagttc
ctcatcctcctccagcccatcgccgacgaccccgctgttggcgccgagaccagggagacc
ctcacgcggctgctggatttgggggtggtgaggctgaagcgcgaggtcgagggaggtgga
ggggaggcgggcgctggtgccgaggaggccgcggtcaccgaggaggatctgagggggcta
tggggggtgttcctcgataacgcccttgtatttgacgcattgtgcgtgggcgtctcgagg
cagatcggcttggacgggggtttcggcgctgatgtgctcctgttgctgcgtcagaacgtg
cagcatgcccacttggacgccgtgaagacactacttgcagtggatgatcttgatggtgct
gctggccatctccggtttctttgtctggatcatggtgtagagaaggatgagtacaagctt
gtcatatcagagcttctcagaaagggttgggaaaaagcatccaattatggtggaagatgg
tctcagttgcgggatagaataactaaaatgtacgaagcagctcttcagtctactagtccc
cagctcgtgcaactgtttcaggccattctggatgacattgtttctgaagaaattgaagat
cataatatctctaatactaatgggatgcctcttcctttcacaaaatttgtggaaacattg
tcattggagaggggtactgactcagatgacaggaccttgttggatgcagctatagcatcc
tgcaagaaagatctgtaccattattgtcgactctctggaaagcatatgcttgaagtagtc
ttggaaactgctctgtcatcaattaagagggagcagcttcaagaagctgttgatgttgtt
tcgttgttcccccttctccagccattggttgctgtcttggggtgggatattctgaagggt
aaaacagctctacggagaaaactaatgcagatgttctggacaagcaaatcccaagctcta
cgactacaggaatattcacattaccgtaagacagatgagacatcctgcgaggaatacttg
tgtgatcttttatgctttcatctggatcttgcatgttttgtttcaagtgtgaattctggc
cgcccgtggaatttaaggaattcattattgttttcccaacagcatcaaggttcagatgtt
aacaatgcagaaatattagatccttttgtggagaacctgatacttgagcgcctagctgtt
cagactcccatgagagtgctatttgatgtagtcccaggaataaaatttcaagatgcgatt
gagcttgttggtatgcagccacttccttcaacaactgcagcttggaagaggatacatgat
attgaactgatgcacatgcgatatgctcttcagtcagttgtgcttgctctaggagagatg
gagaagtgtgcaggtgatgggaacgagtgttattatcataaagcgttgtcatatctgagg
gagatgcaaaattttatggaggctatcaaaagtactccaagaaagattttcatggtcagc
attatattgtcattgttacatatggatgactctgtcaaactgtctcaagcagtcccttct
gagtgccatgttactcatgaatgccatgataataatatcgaatctgagggaaagaacatg
gtggtatattttgttgggcttctacttgatatacttcgtcataatctccaagtgaaaggc
cctgatatggatcacctgtccagtactagtctgtcatctgctggtaggcaagccttagaa
tggaggctcaaacatgccaaacattccattgaagacttggattggcgtctatctgttcta
aagcgtcttcaacctttgtctgagaggcaatggagttggaaggaggcattagttcttcta
cgagctgctccttcaaagttattgaatgtatgcatgcaaagggaaaactatgatatagga
gaagaagctgtacagagattttctctacccgctgaggataaagcttctcttgaactagcc
gaatgggtagctggcgcatataaaagagcattggttgaagatgctgtgaatcgtgctacc
gataacacgaatgcagcacaggaattggatattttggcattacgtgctcagcttggttct
ctaactacgattctgctttgtgttgatgttgctgcaacatctgctaggtcaggtgatatg
tgccgatttcttcttgatgaggcaacaagcttgctatctgaaatatttccagggagctcc
ccaaaagtaggcgcaacttactgggatcaggtccaagaacttgctatgatatcagtgata
aagcgcatccttcagcgtctgcatgacatcttggatctggaagctcttccatatcttcaa
gtgttttttaccgagatgagcatctcttcatcaactgaatctagcagagttggacaaaag
caacgccctcttggtcttttgcaccaaatgattgatgatgccttcaaaggaaagcgacaa
ttcttgagtggtaaacttcacaatgttgctagggctattgttgatgaagactttgatagt
gtttatgcaaaggaaggtgtcaacttggaaaagaaagatgttttgagttctgagaaaggt
gtagtccttggtcatgggcttaggatactgaaacaagcatctaggagtgaccttgcatct
tcaaatgttctggaaagcagttcagaacacaaaggttctgcaaatagatatatgggtcct
ctatctaccaagccatcaacatatttatcgaacttcataatatatattgcaaccatcggc
gacatagttgatggaactgacacaactcacgatttcaactacttctcattagtctacgaa
tggccaaaagatctattaactcgtctagtttttgagcgtggaagcaccaatgcggctgca
aaggtagctgacacaatgggtgttgattttgtgcacgagattatatcagcatgtgtgcca
cctgttttacctccacgaacaggacatggatgggcttgcattccagttgtacctattctt
tctaatattacttcagaaaacagatcatctgccattccaaagtcccttcctcctgctcaa
ggatggagtgcacatgattcgtcattgtcttctcatcaagaacctctctatcctcttcag
ttaaatttagtgaagcatttagcccagttatcatcagtaagagcagttttggcatgtgta
tttggaagtaccatactatctggtgacaacgaatcatctcctacttatgggcaagataca
gctcaaacccctgaaatcgagaggtcatttttcgaatttgctctcgagcaatcagagaga
tatccaaccttgaaccggtggatacagatgcagtctaatcttcatcgagtatctgagtca
tccgtgacagataaatctgaaagtgaagtctctttgcatcaatccaagggaaagtattct
atgaagcgaccccgcgaacctgttagtgatggtgagtcagagcttgaagatattgtaata
agcgggaacactacttcaagtccgctagaatcccctaaacatgaagacactagactagag
acaaccacttttatttcatttgattgggagaatgaaggaccatatgaaaaagctgttgag
aggctaattagtgaaggaaaactaactgatgctcttgctgtatctgatcggtgtttgcgc
aacggagcatctgataaattgcttcaattgctcatcgaacaagaagaaagaagtctaggc
acaggacaaattcgtgcatatggatctcacaatcttgggagtgatacttggcaatactgc
ttgaggctaagagacaaaaaacttgcagctcagcttgctctaaagtatctacgcagttgg
gaccttgatgctgcctctaatgtcattactatgtgcatgtgccacttacctgagaaggat
cccatgcggagtaaggtgtggcacatgaagcaatctttacagcggtatggtcatattatg
agtgctgatgaacactacaccagatggcaagaggttgaagccgattgtgaagatgaccca
gagggcttggcactccgtcttgctgctaaaggagctgtttccgctgctttagaggttgct
gaaagtgcctctttatcaattgatttgcggagagagttgcaaggccgccaacttgtcaaa
ctgctaaccactgatccacttaatggtggaggcccagccgcagcttcaagatttctgtca
accttaagagattccaatgatgctcttcctgtagccattggtgctatgaagctattacct
gacttgcgttcaaagcagcttcttgtacattttttcctcaagcgtacagttgggagtctt
tcagatgctgagattgcacggcttaattcatgggcattaggtcttcgtgttctttcctta
ttgccattgccatcgcaacagcgttgctcttctctgcatgaacaccctcagttgatcata
gaagtactattgatgatgaaacaattccagtctgcttctttgattttaaaagaatttcct
gcactgagagatgataggttaattatttcttatgccaagaaagcaatctccattaatgtc
agttcaacccctagggaacggcgactgtccatctctgcaacaagagcaaaacaaaaaaag
gccaccactccagttaaaacaaattttgtgcagagttttggcaacttccagagagaagca
cgcaaagcattctcgtgggtgccccgtgacagtggcactaaaacacccccaaaagatacg
ccccggaaaagaaaaagttcaggttcaggtggtgatagatcctcttgggatgcaatgcct
gctgtacaggaggagcagacacctgtatatccttctgaagggcaagatagacttcctttc
gtctctgctcctgatgagtgggtgctgacgggagaccctgacaaggatgacacaacacgt
tcatctcatagatatgaaacctctcctgacatcacactgttcaaggcattaatttccttg
tgcagcgatgagtcagtagctgcaaaaggtgcacttgaactgtgtatgactcagatgaag
gttgtacttagctcccaacaattgccccttgatgcctctatggataacatagctcgagct
tatcatgcaacggaaacttatgtgcaggccctctcttacgcaaaaaatctacataagaag
ctcgttgggagtagtgatttgtcaagtggttctgaaagaagtagggatgtcgatgatatt
tctgtggacactagcagttcaagtgctgggagccagtatctagatgagctgtctgatctc
ctggctcaagcagacatgtggttagggcgtgcagagcttcttcaaagcctgctgggatca
ggtattattgcctcgcttgatgatatcgctgacaaagaatcttcaactcgtctacgtgac
agattggtcagcgatgaacggtacagcatggctgtatatacttgtagaaagtgcaagatt
gacgcttttccggtatgggttgcatggggccatgctttagttcgaatggagcactatgct
caagcccgtgtgaagttcaagcaagcacttcaacaatacaaaggcgatgcagctactgtt
gttactgaaatcattaacacaattgaaggaggacctccggttgatgtttcttctgtccgt
tccatgtatgagcatttggcaaagagtgcagcaaccatctttgatgattccctttctgct
gatgcttatcttaatgttctgtacatgccatccacattcccacgatctgagagttcccga
cagtccagagatcctatggacaaccaattcacatctgctagctcataccttgaagatggt
cctcgcagcaatcttgacagtgtcagatatgccgagtgtattcattacttgcatgattat
gctcggccacaaatgctggctttcatgttcaggcatggccattatgctgaagcatgctct
ttgttcttcccttttaatcaaccaaccactgaaggggaaacttctgtgtcttcagttcca
tggagtgacccgttaacaactgactatgggacaattgacgacttgtgcgatctatgtctt
ggatatggtgccatggctgttttggagaacacaatacgggcagtaacacaatcgcccgca
tatcatgagacacctgtgatccagtacatgaacactgttctcacccgcatttgcaactat
tgtgaaacacatcggcattttaattatctctacaactttttggttctaaaagatgaccat
gttccttctggcctttgttgtatccaattatttatgaattccatgtctcaagaggaggct
ttgaggcatttgggacatgccaagacacattttgaagaagccttatctgtacgagataga
acgatggaggctacaaagttggtattgcggtctgctcggaataagagcacaccaggaaaa
atgaccagagaaactataatgaaatattccactcgtgtttcctatcagatggatgtagtg
aaggccctcaacaatatagatggtcctcagtggaaaacttcccttttcgggaatcctact
gaccctgaaactatgaggcgaagatgcatggttgttgaaactctggctgaaaagcatttt
gatttagctttcagaatgcttcatgagtttgatctcccagctgttgatatttatgctggt
gtagctgcatcccttgctgaaaggaaaaaaggtggccaactaacagagttcctgaagaac
ataaggggtactatagatgatgatgaatgggatcaggttcttggtgctgctataaatgtt
tatgccaacaagcataaagaaagaccagatcgacttattgacatgctaatcagcaatcac
aggaaagtacttgcttgtgttgtctgtgggcgtctaaaaagtgcattccaaatagcctcg
cgaagtggaagtgttgctgatgttcaatatgttgctcatcaggcattacacgcaaatgca
ttgccggttcttgatatgtgtaagcaatggctggcccagtacatgtga
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integrated database retrieval system
