Panicum virgatum (switchgrass): 120672841
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Entry
120672841 CDS
T07260
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120672841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120672841
Spliceosome [BR:
pvir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120672841
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
120672841
NCBI-ProteinID:
XP_039809384
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Position
2K:25776159..25780602
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AA seq
861 aa
AA seq
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MDRDRSSRRAREDDGRSRDRDDDRHRRRSRHDIDDNHKHEGGDDDRRRRHRHREKDGGGA
DEDSRSHRHHRNKEDHRSHRHRDGGDDGDDRRRDSRRSVSSSESPPSFTNRDRSSSRPRE
SIERRDSADLEPPSSSRKRGHEGGGGGDEADRDVGKRARASVEPPPPKEERPRRERRRFE
DVDADGKNVDVRSKGSKEISSHDQKGELAVNGDLQSGAARNDGSQQPLNAAPAVVSSSIP
VSSKVSSITTNNENEGVSIRSDQVTGKSSTDGSATSAAGKNSNLSLDALAKAKKALQLKK
ELSEKLKKLPMLNKLGTTGTDTQVSKKENTKTAVEALTVTKGEAKHTGPVSGLPTSSVSG
TPAAAGAIGIPGLTNISNLDAVKRAQELAAKMGFRQDPQFAPLINMFPGTSTELTVPQRP
PKAPVLRLDAQGREIDEQGNIISMSKPTNLSTLKVNINKQKKEAFQIIKPDLDSLAKSSA
HFDERMGINQNKLLRPKRPGFQFVEEGKLSRQAELHRIKSQFGEAQAKELKVKQAQLAKV
KAEVDMNPNLIEVASGMRAPKQKQKEAIPDIEPWDAKILLSATYEVFTVEKLNMDRITIY
VEHPEPLDPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVK
MSNLMKVLGSEAVQDPTRLEMEIRTAAAEREQAHVDRNIARKLTPSERREKKERKLFDDS
TNTVETTVCVYKIRDLSHPQTRFKVDVNAQENRLTGAAVITDGISVVVVEGGKKSIKRYN
KLMLNRIDWAAAVSGEDDADEEPDKPVNSCALVWQGSVAKPAFHRFTVHNCRSEAAAKKV
FADASVPHYWDLAVNFSEDSS
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgaccgctcctcccgccgcgcccgcgaagacgacggccgctcccgcgaccgg
gatgacgaccgccaccgtcgccgcagccgccacgacatcgacgacaaccacaaacacgaa
ggcggggacgacgaccgccgccgccgccaccgccaccgcgaaaaggacggcggcggcgcc
gatgaggacagccgcagccaccgccaccaccgcaacaaagaagaccaccgcagccaccgc
caccgcgacggtggggacgacggcgacgaccgccgccgcgatagccgccggtccgtgtcc
tcgtcggagtccccgccgtccttcacgaaccgggaccgctcgtcgagccgcccgcgggag
tccatcgagcgccgcgactccgctgacctcgagccgccgtcctcgtcacggaagcggggc
cacgagggcggtggcggtggggacgaggccgaccgagatgtcggcaagcgggctagggcc
tctgtggagccgcctccccccaaggaggagaggcctaggcgtgagcgccggaggtttgag
gatgttgatgctgatggaaagaatgttgatgtgaggagtaaggggagcaaggagatctca
tctcatgaccagaagggggagttagcagttaatggagatttacagagtggtgctgcgcgt
aatgatggttctcagcaaccgctcaatgctgcacctgctgtagtgtcatcgtctattccc
gtgtcttcaaaggtatcttcgattactaccaacaatgaaaatgagggggttagtattaga
tctgatcaggttactggaaaatctagtacagatggaagtgcaacctcagctgctggcaaa
aatagtaatctatctcttgatgctttagccaaagcaaaaaaagctttgcaactgaagaag
gaattgtcagaaaaactcaagaagttacccatgcttaataaacttggcactactggcact
gatacacaagtttctaagaaagaaaatacaaaaacagctgtagaagcactgactgttact
aaaggagaagcaaagcatactggtccagtttctggtctgcccacaagtagtgtctctggg
actccagcggcagctggtgcaattggtattccgggtcttacaaacatttccaatctggat
gctgtgaagcgagcacaagagcttgctgctaagatgggattccggcaagatccacagttt
gctcctctcatcaacatgtttcctggtacatccaccgaacttactgtgcctcaaagacct
cccaaggctcctgtccttcgccttgatgctcagggtagggaaattgatgagcagggaaac
attatcagcatgtcaaagccaacaaatttgagtactctaaaggtcaatataaacaagcaa
aagaaggaggcttttcaaatcatcaagccagacttggattctcttgcaaaatcaagtgct
cattttgatgaaaggatgggcataaaccaaaacaagctcctccgtcctaaaagaccagga
tttcagtttgttgaagagggcaaactctctaggcaggctgaattgcatagaattaagagt
caatttggtgaagcacaagctaaagagctcaaagtaaagcaagcccagcttgcgaaggta
aaggcagaagtagacatgaacccaaaccttattgaagttgcttctggtatgagagctcca
aagcaaaagcagaaggaagcaattcctgacattgagccatgggatgcaaaaattttactt
tccgccacatatgaggttttcactgtggagaagcttaatatggacaggatcaccatatat
gtggaacatccagagccattagacccaccggctgaaccggcaccaccgccgccccagcca
ctgaagttaactaaaaaagagcagaagaagctgagaacacagaggcgtcttgctaaggaa
aaagataggcaagaaatgattaggcaaggcctattggagccacccaaaccaaaggtcaaa
atgagcaatcttatgaaagttctaggctctgaagctgtgcaagatcccacacggctggag
atggaaatcagaactgccgctgcagagcgtgagcaggctcatgtagaccgcaacattgcc
cgcaagctcacaccatctgagcgccgtgagaagaaagagcggaagctctttgatgattct
actaatacagtggagactacagtttgtgtttacaagatcagagacctgtcccatccacag
acacgcttcaaagttgatgtcaacgcacaagagaataggctaactggtgctgcagtcatc
accgatggtatcagtgttgtggttgttgaaggagggaagaagtcaatcaaaaggtacaat
aagctcatgctcaaccggatagactgggcagccgcagttagtggtgaggatgatgctgac
gaggaacctgacaagccagtgaatagctgtgcattggtctggcagggcagcgtggcaaag
cctgccttccacaggttcactgtacacaactgccggagtgaggctgctgctaagaaggtt
tttgctgatgcctccgttcctcactattgggaccttgctgtcaatttttctgaagattca
tcatga
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