Panicum virgatum (switchgrass): 120672908
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Entry
120672908 CDS
T07260
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120672908
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120672908
Spliceosome [BR:
pvir03041
]
Complex C
Other components
Complex C specific factors
120672908
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
HA2_N
DEAD
AAA_30
AAA_19
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
120672908
NCBI-ProteinID:
XP_039809458
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All DBs
Position
5N:complement(2528209..2540581)
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AA seq
650 aa
AA seq
DB search
MSYKYWNLSLFVMEYAATIVVGETGSGKSTQIPQYLKEAGWADGGRLIGCTQPRRLAVQT
VASRVAEVGMKLGEEVGYTIQFEDQTNPGMTMIKFLTDGVLIREMMEDPLLTKYSVIMVD
EAHERSISTDMLLGLLKMIQRRRPELRLIISSATIEARSMSTFFNIRRKNSLLGSSDDLP
NPEPAILSVEGKGYTVEIHYVEEPVSDYLRAAVNTVLLIHEKESPGDILVFLTGQDDIDA
AVKLLNEEIQHLGRHYLDLLILPLYSGLPRGDQDLIFAPTSKGKRKVVLSTNIAETSLTL
EGVVYVVDSGFSRQKCYNPISDIESLVVTPISKASARQRAGRAGRVRPGKCFRLYTEEYY
LNEMQSEGIPEMQRSNLVSCIIQLKALGIDNILGFDWPASPSPEAMIRALEVLFSLGILD
EDAKLTVPIGFQVAEIPLDPMISKMILSANDFGCSDEILTIASFLSVQVRISVWVSVRGV
KKEFDEAKLRFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNFQALKKVVEIRGQLLR
IVKGFGIPLKSCDRDMQAVRKAIIAGSFANACHLEEYSQNGMYKTIRTSQEVYIHPSSVL
FRVNPKWVVYQSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtcatacaaatattggaatctctcattatttgttatggaatacgccgccaccatcgtc
gtcggcgagacaggcagcggcaagtccacacagatccctcagtaccttaaggaggctggt
tgggctgatggtggtcgacttattggatgcactcagcccaggcgattggctgtgcagacg
gttgcatcaagggtagctgaagtaggcatgaaacttggagaagaagttggttatacaatc
caatttgaagatcaaacaaatccgggtatgaccatgataaaatttctcacagatggggta
ttgattagagaaatgatggaagatcctcttcttaccaaatatagtgtaattatggtggat
gaagctcatgaaagatccatctcaaccgacatgttgctgggactcctgaaaatgattcag
cgtcgccggcccgagctgcgtctgatcatctcctctgcaacaatcgaagcaagatcaatg
tcaactttcttcaacattaggcggaagaattccttgctcgggtcttctgatgatttgccc
aacccagaacctgctatactttctgttgaaggtaaaggatacaccgtggaaattcattat
gttgaagaacctgtctcagactacttacgggctgctgtgaatactgtacttcttattcat
gaaaaggaatcaccaggggatatcttggtattcttaactggtcaggatgacatagacgct
gctgttaagttgctgaatgaagaaattcagcacctcggaagacactatttggacttgctg
attttgcccttgtactctggccttccgcgtggagatcaagatctcattttcgctcctact
tcaaaaggaaaaagaaaagttgtgttatcaaccaacattgccgagacgtcgttgactttg
gagggtgtggtgtatgttgttgatagcggattttccaggcagaagtgttataatccgatt
tctgacatcgagagtttagttgttacaccaatatccaaggcctctgcaagacaacgagca
ggcagagctggaagggtgcggcctgggaagtgctttaggctttatacagaggaatattat
cttaatgaaatgcagtcagaaggaattccagaaatgcaaaggtccaacttggtctcctgc
atcatacagttaaaagccctaggcatagacaacattcttggctttgattggccagcttct
ccatctccagaggcaatgattcgggctcttgaagttctattctccctaggaatccttgat
gaagatgccaaattaacagtacccattggtttccaagttgctgagatccctctggacccc
atgatttcaaaaatgatcttgtcagcaaatgattttggatgctctgatgagatattgacc
atagcatcatttctatctgttcaagttagaatttccgtgtgggtttctgtgaggggagtg
aaaaaggaatttgatgaagccaagcttcgatttgctgctgctgagggagatcatgtaaca
tttctgaatatatacaaaggatttcaccagtctggaaaatctagccaatggtgttacaag
aactttttgaatttccaagcattgaagaaagtcgttgaaattaggggccagcttctcagg
atagtgaagggttttggaataccgctgaaatcatgtgacagagatatgcaggcagttaga
aaggccattattgccggttcatttgctaatgcatgtcatctggaggaatacagccaaaat
ggaatgtataagacgattaggacatcacaagaagtgtacattcatccatcttcagttctc
tttagggtcaatccaaagtgggttgtttaccagtctcttgtttcaaccgacaagcactac
atgcggaatgttattgccattgaaccgtcatggcttacagaagctgcaccacatttttat
cagttccgaacacccaatccagctctccactaa
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