Panicum virgatum (switchgrass): 120672939
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Entry
120672939 CDS
T07260
Name
(RefSeq) arginine--tRNA ligase, cytoplasmic-like isoform X1
KO
K01887
arginyl-tRNA synthetase [EC:
6.1.1.19
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
120672939
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pvir01007
]
120672939
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120672939
03029 Mitochondrial biogenesis [BR:
pvir03029
]
120672939
Enzymes [BR:
pvir01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.19 arginine---tRNA ligase
120672939
Amino acid related enzymes [BR:
pvir01007
]
Aminoacyl-tRNA synthetase
Class I (G)
120672939
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
120672939
Prokaryotic type
Other AARSs
120672939
Mitochondrial biogenesis [BR:
pvir03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
120672939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1d
DALR_1
Arg_tRNA_synt_N
tRNA-synt_1g
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
120672939
NCBI-ProteinID:
XP_039809503
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All DBs
Position
5N:complement(6941511..6947906)
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AA seq
614 aa
AA seq
DB search
MDDEGASTSSASDSETQHHESAAAEHGLESVKRKLCRLVASSLSVTVPGLDVEPMLEVSK
PGFGDYQCNNALSLFSSLRGTGTNFQNPRSIGQTILNNLPSSDIVESTSVAGPGYVNIVI
SSDWIAKMIQDMLIYGIKTWAPTMPVNRVIVDFSSPNIAKEMHVGHIRSTIIGDALARML
EFANVEVLRRNHVGDWGTQFGMLIEFLFEQFPNWKEVGNQAIEDLQSFYKASKIKFDDES
SGFKAKAKQAVVRLQQGEDRYRAAWEKICQISHNEFDSVYKRLGVELEEKGESFYNPYIP
PVLEELTNKGLITKSEGAQVISIAGQKSPLIVVKRDGGFNYASTDLAALWYRLNVERAEW
IVYVTDVGQKQHFHKFFSAASMAGWLPDQNEKEYPKTTHVGFGLVLGLDGKRFRTRCSEV
VRLVDLLDEAKSRCKEELIGRLTENGKIADWTVDELDTTSEAIGLGAVKYADLKNNRLTD
YTFSFDKMLSDKGNTAVYLQYAHARICSIIRKANKDIEELKTKASITFVHADERALGLHV
IRFQEVVEQACADLLPHYLCDYLYSLSEAFSKFYASCQVVGSPEEASRLLLCHATAVVMR
QCFNLLGITPVYKL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgagggagcatccacttcttctgcttcagattccgaaacgcagcatcacgaa
tccgcagctgctgagcatggactggagagcgtcaagcgaaaactctgcagattagttgca
tcatctctttctgtaactgtacctggcctggatgtggagccaatgcttgaggtatctaaa
ccagggtttggtgattatcagtgtaacaatgcattgagtttattttcaagtttacgagga
acgggtacaaacttccaaaatcccagatcaattggacagacaattttgaataatctgcct
tcttcggacattgttgagtccacctccgttgctggccccggatatgttaacatagtcata
tccagtgattggattgcaaagatgatacaagacatgcttatctatggcatcaaaacatgg
gcgccaaccatgccagttaatagggtaatcgttgacttttcatcccctaacatcgcaaag
gagatgcacgttgggcatataagatcaaccataattggagatgcactagcacgcatgttg
gaatttgcaaatgttgaagttcttcgacgcaaccatgtgggagactggggcacacagttc
ggcatgctgatagaatttttgtttgagcaattcccaaattggaaggaagttggcaatcag
gcaattgaagatcttcagagcttctacaaagcatctaagataaagtttgatgatgagagc
agtggttttaaggctaaagctaagcaagcagtagttcggctgcagcaaggggaagacaga
tatcgagctgcatgggaaaaaatatgtcaaatcagtcacaatgaatttgactcggtgtac
aaacgcctcggtgtggagcttgaagaaaagggagagagcttttacaatccttacatcccg
ccagttttggaggaattaacaaataaaggcttgattacgaaaagtgaaggtgctcaagta
atatccattgcaggccaaaaatccccattgattgtggtcaaacgtgatggtggcttcaac
tatgcctccacagacttggctgctctttggtatcggcttaatgtggagagggcagaatgg
atagtatatgtaacagacgtaggtcagaagcaacacttccataagtttttcagtgctgct
agcatggctggctggctcccagatcaaaacgaaaaggagtaccccaaaacgacccacgtt
ggctttggccttgttcttgggttagatggcaagcgtttccgaactcgctgctctgaagta
gttcgactggtagatctacttgacgaagctaaatctcggtgcaaagaagaacttattgga
cgccttactgaaaatggtaaaattgctgactggacagttgatgagctggacacaacttcg
gaggctataggactgggcgctgttaagtatgcagatcttaaaaacaaccggttaacggac
tacacatttagtttcgataagatgttaagtgacaagggaaatacagctgtctaccttcag
tatgcgcatgctcgtatctgttccattatccggaaagccaacaaggatattgaagagttg
aaaacgaaggcgtccattacctttgtccacgctgatgagcgtgccttaggattacatgta
atacggttccaagaggttgtcgagcaggcctgcgctgatctgcttccacattatttgtgc
gactacctgtacagcttatctgaagcattctcaaagttctacgccagctgccaggtggtt
gggtcacctgaagaagcgagccgtctgttgctttgccacgcgacggccgtcgtcatgcgg
cagtgtttcaacctgctgggcatcacaccagtatacaagctgtaa
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