Panicum virgatum (switchgrass): 120672954
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Entry
120672954 CDS
T07260
Name
(RefSeq) transcription factor MYB3R-2-like
KO
K09422
transcription factor MYB, plant
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120672954
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
120672954
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
SANT_DAMP1_like
DUF6480
Sigma70_r4_2
Rap1_C
Motif
Other DBs
NCBI-GeneID:
120672954
NCBI-ProteinID:
XP_039809526
LinkDB
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Position
5N:63347920..63354596
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AA seq
555 aa
AA seq
DB search
MGAMAEVVQEGCVENRQPLAASSSSVSDGSSSGGGVQAGASPPVSSSGNSISGLRRTSGP
IRRAKGGWTPEEDETLRKAVETFNGRNWKKIAEFFHDRTEVQCLHRWQKVLNPELIKGPW
TQEEDDKIIDLVRKYGPTKWSIIAKSLPGRIGKQCRERWHNHLNPEIRKDAWTPEEERAL
INAHRVYGNKWAEIAKALPGRTDNSIKNHWNSSLRKKLDVYGTNSVLAAPNLLAHDDFKD
QMRPVAIGSHLDLNKMPNIGSKDAPGRSHHSIMGPLLQAYNLKSVEDSSGGLLSLSIPTV
QASYSSLVDGSAVTLAVQGLESGSVRDKGLEINSIHEKHEKGTEVCAIQSESAPAQSGTK
ASLKNELYSTLGPLCYQIPNMEEAAPINSSLHSEHHFAHQTTRHSRDGLMSPDGYTSPSP
TIGEVSSPLTVDSILKTAADSFPCTPSILRKRKRDKSTPTSDNFVTPNGMGASTNSPQSF
KTASFLSLGPIDDGLLTSVRSSDASPPYQIRSKRMVAIKSVEKQLDFSADGLDTSGSEIL
NSPCRNSEGANSNRT
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgatggcggaggtggtgcaggaggggtgcgtggagaatcggcagcccctggcg
gcgtcgagctcctctgtgtctgatggcagcagcagtggcggcggagtccaggccggggcg
tcgccgccggtatcaagctcggggaattccatctccggtctgaggcgaacaagtgggccg
ataagaagagctaagggtggctggacaccagaagaggatgaaacactgcggaaggcagtc
gaaactttcaacggtagaaactggaaaaaaatagctgaattcttccatgataggacagag
gtacaatgtttgcatcgctggcaaaaggttcttaatcctgagcttatcaaaggcccttgg
actcaagaggaagatgataaaatcatcgaccttgtgcgcaagtatggaccaacaaaatgg
tctatcatagccaagtcattgcctggccgcataggcaagcaatgccgagagaggtggcat
aatcatctgaatccagaaataaggaaagatgcatggactcctgaggaggaaagggcactc
attaatgctcatcgagtgtatggaaataagtgggcagaaatagcaaaagctcttcctgga
aggactgacaattctataaagaatcattggaacagttctttgagaaagaagctagatgtc
tatggtaccaacagtgttctcgcagctccaaacctgcttgcccatgatgatttcaaggat
caaatgaggcctgtagctattggcagccatcttgatctgaacaaaatgcccaacattggt
tcaaaagatgcccctggaagatctcatcactccattatgggaccacttttacaggcatac
aatttgaaatctgttgaggactcctctggtggtctcctttctctttctataccaactgtg
caggcttcatactcatcactagttgatggttctgctgttactttagcggtacaaggtctg
gaaagtggctctgtccgggacaagggcctagaaattaattccattcatgagaagcatgag
aagggtactgaggtctgtgccattcaatcagaatctgctccagcccaaagtggtaccaaa
gcatctttgaagaatgagttgtattctacccttggtcctctttgctaccagattcctaat
atggaagaagctgccccaatcaattcctcactccattctgaacatcattttgcacatcaa
acaacacggcatagcagggatgggcttatgtcacctgatggttatacttccccatctcca
acgattggcgaagtatcaagtccactaactgtcgattcaatcttgaaaactgctgctgac
agctttccatgcactccttcaatattaaggaaaagaaaacgtgataaatcaacacctact
tcagacaactttgtcactcctaatgggatgggagcttctacaaattctccgcagtcattt
aaaactgcatcatttttgtcattgggccctattgatgatgggttattgacatctgtaagg
agctctgatgcttcacctccgtatcagatcaggtcaaaaagaatggttgccataaaatca
gttgagaaacagctagatttttcagcagatggattggatacttctggttctgaaatcctg
aactctccttgccgtaattctgaaggcgcaaattctaataggacgtag
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