KEGG   Panicum virgatum (switchgrass): 120672972
Entry
120672972         CDS       T07260                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 homolog
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120672972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120672972
   03400 DNA repair and recombination proteins [BR:pvir03400]
    120672972
Spliceosome [BR:pvir03041]
 Complex B
  Other components
   Prp19 complex
    120672972
 Complex C
   Prp19-CDC5 complex
    120672972
DNA repair and recombination proteins [BR:pvir03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    120672972
SSDB
Motif
Pfam: BCAS2 THOC7 Leu_zip ANC1_spectrin
Other DBs
NCBI-GeneID: 120672972
NCBI-ProteinID: XP_039809551
LinkDB
Position
5N:14242053..14245318
AA seq 254 aa
MASSSTREVLMLEAPPPSDPALAPWRAPPDAEAVDALPYIDGDYGDPAVKREVDRLVEEE
MRRGQRKPADFLRDLPPVPTVGFENHPMLAKEYERVRAGKPPFMLDMSRYGLEPPPMNKR
NDVAAWRQALRNAQSQLQHQITRIENLELMLKYGVEVWKLQNRQMESVVSRMQKTAVEYN
EKIETVNRERKFHQLHTGGQLHALTMEWQELCQKNIAIQAACVDLQNQIDQLKLEAKELG
MPMEDNTGTNSQPS
NT seq 765 nt   +upstreamnt  +downstreamnt
atggcctcgtcgtccacgagggaggtgctcatgctggaggccccgccgccgtccgacccc
gcgctggcgccgtggcgcgcgccgccggacgcggaggccgtcgacgcgctgccctacatc
gacggcgactacggcgacccggcggtgaagcgggaggtcgaccgcctcgtcgaggaggag
atgcggcgcgggcagcgcaagcccgccgacttcctccgggacctgcccccagtccccacc
gtcggatttgagaatcatcctatgcttgctaaagagtatgagcgagttagggctggcaag
cctcctttcatgttagatatgtctcgctatggtttggagccgcctccaatgaacaaaagg
aatgatgttgctgcctggaggcaggctctacggaatgcgcagagccagttgcagcatcaa
attacaaggatagagaatcttgagcttatgctgaaatatggtgttgaggtttggaagctg
cagaaccgacaaatggaatcagttgtgtctaggatgcaaaagacagctgtagaatacaac
gaaaagatagagactgtcaatcgtgagaggaagttccaccagctacacactggaggtcag
ctccatgcgctgacaatggaatggcaggagctgtgtcaaaaaaacatagctattcaggct
gcttgtgttgacctgcagaaccagattgatcagcttaaacttgaagcaaaagaattggga
atgcccatggaagacaacactggaaccaattcacaaccatcatga

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