Panicum virgatum (switchgrass): 120672981
Help
Entry
120672981 CDS
T07260
Name
(RefSeq) RAN GTPase-activating protein 2-like
KO
K14319
Ran GTPase-activating protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120672981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120672981
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
120672981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WPP
LRR_6
LRR_4
LRR_14
DUF6096
NPIP
Motif
Other DBs
NCBI-GeneID:
120672981
NCBI-ProteinID:
XP_039809574
LinkDB
All DBs
Position
5N:14201441..14204417
Genome browser
AA seq
626 aa
AA seq
DB search
MRKNTIYSVLQQILPSKNGSSPPFFLNLPLLSDSLLPCSSFPGGATGRAAAPFVTSSPSP
FAADEHQPGCGVNFEAFQMDSAGQDFQPRTFSIKLWPPSESTRLMLVERMTVNLSTESIF
SRKYGLLGKEEAHENAKRIEQLGFTSADEHFKREPDGDGSAAVQLYAKETSKMMLEVLKK
GPRITAESEAPVSDTPLGGDSVLDISGGKRAFIEAEEAKELLSPLTKPGNSYKRICFSNR
SFGIDAANVAGPILESVKNQLTEVDISDFVAGRPEDEALDVMHIFSKALEGSVLRYLNIS
DNALGEKGVRAFSELLKSQENLEEFYVMNDGISEDAAKALSELIPSTEKLKVLHFHNNMT
GDEGAVYVAEMVKRSPNLESFRCSATRIGSDGGVALSEALGTCTHLKKLDLRDNLFGVDA
GIALSKTLPKLPDLVELYLSDLNLENKGAVAIVNALKQLAPQLEVLEMAGNEINAKAAPA
IAECLTVMQSLKKLTLAENELKDAGAVIIAKSLEDGHADLKELDVSTNMFQRAGARCFAR
AVANKPGFVQLNINGNFISDEGIDEVKDILKAGKNSLDVLGSLDENDPEGEPDGGDEEED
DEDAKDDDDEDGLDLKLQNVQVEQDD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaacaccatttacagtgtcctgcagcaaattttgccttcaaaaaatggttca
tctcctccctttttcttaaaccttcctcttctctcggactctctcctcccttgctcctcc
ttccctggcggcgcgactgggcgagcggcggcgccatttgtcacgtcttcgcccagccct
tttgcagccgacgagcatcaaccagggtgcggtgtcaattttgaagcttttcaaatggat
tcagcaggacaagacttccaacccaggacattctccatcaagctgtggccaccaagtgaa
agcacacgcctcatgcttgtagagagaatgacagtgaatctgtccactgagtccatattt
tctcgcaagtatggacttttgggcaaggaagaggctcatgagaatgctaaaaggattgaa
caactgggctttacatctgcagatgagcatttcaagagagaacctgatggtgatgggagt
gctgctgtccagctgtatgccaaagaaactagcaagatgatgttggaagttctaaagaaa
ggcccaaggattactgcagaatcagaagcaccagtgtctgatacacctcttggtggtgat
tctgtattagatatatctggtggcaagcgtgcctttatcgaggcagaggaagcaaaggaa
ctgctgagtccactaaccaaaccaggaaactcatataaaaggatttgctttagcaatagg
agctttggtattgatgctgctaatgttgctggacctattctcgagtcagttaagaatcag
cttacggaggtagatatatccgattttgtcgcaggaaggccagaggacgaagctcttgat
gtgatgcacatattctccaaagcactagagggttctgtactgagatatctaaacatatct
gacaatgcactaggtgagaagggtgtcagggcattcagtgagctcctgaagtcacaggaa
aatttggaggaattctatgtcatgaacgatggcatatcagaagatgctgcaaaagctctt
tctgagcttattccttcaactgagaagcttaaggttctccacttccacaacaacatgact
ggagatgaaggtgctgtgtatgttgctgaaatggttaagcggtcaccaaatctggagagt
ttcaggtgctcagcaacaaggatagggtctgatggtggtgtcgcattgtctgaggcattg
gggacatgtacacatctgaagaaactagatcttagggataacctgttcggtgttgatgca
gggattgctcttagcaaaacccttccaaagcttcctgatcttgttgagctttacctcagt
gacctcaatcttgagaataagggtgcagttgcaattgtcaatgccctcaaacagttagca
ccacagttggaagtccttgaaatggctggaaacgaaataaatgccaaagcagccccagct
atagcagaatgcttaacggtcatgcagtcactcaagaagctgaccttggctgagaatgaa
ctcaaggatgctggtgctgtgattattgcaaaatctttggaagatggccacgcagatctg
aaggaacttgatgtaagcacaaacatgtttcagagggctggagcacgttgctttgcacgg
gcagttgcaaataaacctggttttgtgcaactgaacatcaatggtaatttcatctccgat
gaagggattgatgaggtgaaagatattttgaaggctggtaagaattcgctggatgttctg
ggctcactagatgagaacgatcctgagggggagcctgatggcggtgatgaggaggaggac
gacgaagatgccaaggacgatgacgatgaggacgggctcgatttgaagctgcagaacgta
caggtggagcaggatgattaa
DBGET
integrated database retrieval system
