Panicum virgatum (switchgrass): 120673037
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Entry
120673037 CDS
T07260
Name
(RefSeq) structural maintenance of chromosomes protein 6B-like isoform X1
KO
K22804
structural maintenance of chromosomes protein 6
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120673037
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
120673037
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_13
AAA_29
AAA_21
DUF948
SbcC_Walker_B
ABC_tran
DUF1664
Motif
Other DBs
NCBI-GeneID:
120673037
NCBI-ProteinID:
XP_039809659
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All DBs
Position
2K:complement(29686854..29738508)
Genome browser
AA seq
1084 aa
AA seq
DB search
MAAGTISRIRLENFMCHSSLHIELGEHVNFITGQNGSGKSAILTALCVAFGCRAKNTQRA
ASLKDFIKTGCSYASILVDISNHGEDAFKPEVFGNVIILERRITESSSSTVLKDQHGRKV
AHRKDDLVEIIEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLG
SIRKNLNAADSIVEELERSIMPVLKELDDIQDKIKYMEHIEEIAHEIENLKKKLAWAWVY
DVDKKIGEQTEKLEKLRERIPACQERIDRNTAIIEELSKELIVKKENVRSFLEKTQEVRR
MKEKMQHDIHEQSTNMSKTIEKKVDCSSSCFFSLAVKLKMDLEKEHARGMQVLNKMNTRV
KQLEVQVHEFQLQHMQQTQAEVFQVEDSIRELQQEINSANLSATRLSEEEKKLSEELHDI
IKSISDIGKEVDEDGRRINQLKSQIEDLRRRQHDKLTAFGGDRVQNLYRSIERHHSRFKC
PPIGPIGYHVQLASDCWSLAVDCALGRLLDAFIVSCHKDSLVLRECAKEVKYHNLQIIIY
DFAKPRLDIPNHLLPSTTHLTILSVIHSENPTILNVLVDQGHAERQVLVRDYEVGKSVAF
DKRIRNLKEVYTSDGCKMFYRGSVETILPPNRKWRAGRLCTSLGEKIIEIENEAAEIKKI
NSERLDCKGKLVIDRDNINSKLRSLKRKREDEEQHLERKKVQLDDTKKISIANKHDTAVD
TSELEAEMMQVKEDIGNKELVLEKINLKLTDALREENDKRASYKDFIDILCFPVVNSLHI
LNAKCFTPESAHAEMGSISDAEHELQLVEEKIHDAQQDKAHYEGVMEMKVLAPIQMTESE
LTDLQKLHQEYFEKASRICAESEVEALGGVGGSTLEQLSDCINKLNQKFQQESRRYTKTI
DDLRALHDKKGRKILRKQQMYEGFRGKLNACQKALDLRWRKFQRNTGLLKRQLTWLFNEH
LGKKGISGHINVHYKNEVLSVELTMPQDASRDTVRDTRGLSGGERSFSTLCFTLALHGMT
EAPFRAMDEFDVFMDAVSRKISLDTLVDFAVAQGSQWIFITPHDISMVKAGDRIKKQQMA
APRG
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagggacgatctcccgcatccggctagagaacttcatgtgccactccagcctc
cacatcgagctcggggagcacgtcaacttcatcaccggccagaacggaagcgggaaaagt
gccatcctcacagccctatgcgtcgccttcggctgccgcgccaagaatacccagcgcgcc
gcatcgctcaaggacttcatcaagaccggctgcagctatgcttccattcttgttgatatt
agtaaccacggggaagatgcattcaagcctgaagtattcgggaatgtaatcatactggaa
cgcaggattactgaatcaagtagttctacagttttaaaggatcaacatgggaggaaggtg
gcgcatcgcaaagatgatcttgtcgaaataattgagcattttaatattgatgttgaaaac
ccttgcgtaattatgagtcaagacaaaagcagagaatttttacattcaggaaatgacaag
gataagtttaagttctttttcaaggctactcttcttcaacaagtgaatgacttgcttggt
tcaataagaaagaacctaaatgctgcggactctatagttgaagagctggaaagatcgatt
atgccagtgctgaaggaacttgatgatattcaggacaaaataaagtatatggaacatatt
gaagaaatagcacatgagattgagaatttgaagaaaaagttggcctgggcatgggtttat
gatgttgacaaaaagattggggaacaaacagagaagcttgagaaactcagagagcgtatc
cctgcatgccaagaacgaattgatcgaaatacagctatcatagaggaactgagtaaagaa
ttaattgtgaagaaagagaatgttagatcttttctggagaagactcaagaagtaaggagg
atgaaggaaaaaatgcaacacgatattcatgagcagtcaaccaatatgtccaaaacaatt
gagaagaaggtggactgctcatcatcttgcttcttttctttggctgtgaaactgaagatg
gatctagagaaagagcatgcacgtggtatgcaagtgttgaataaaatgaatacccgtgtc
aaacaacttgaagtgcaagttcatgaatttcagctacagcacatgcaacaaactcaggct
gaagtatttcaagttgaggatagcatacgggaattgcagcaggagatcaattctgctaat
ttaagtgctacaaggctaagtgaggaagaaaagaaattatccgaagaactgcatgacatt
attaaaagcatcagtgacattggaaaagaggtagatgaagatggacgtaggatcaatcaa
ctgaaatctcaaattgaggatctcagacgacgccaacatgataagctaacagcatttgga
ggggatagagttcagaacctctatagatctatagagaggcaccatagtagatttaaatgc
cctcctattggtccaataggatatcatgtgcaactggctagcgattgctggtcccttgca
gttgattgcgcattagggaggctactagatgctttcattgtctcatgtcataaggattca
ctcgttttacgagagtgcgcgaaagaagtaaaataccacaaccttcaaattatcatatat
gactttgctaaaccacgacttgacattccaaatcatctgcttccttcaacaacacacctg
acaatactttcagttatccattcggaaaatcctactatactgaatgtattggtggatcag
ggccatgcagagaggcaggtcctagttcgagattatgaagtgggaaagtctgttgcattt
gataagaggatacgaaatctgaaggaagtatatacttctgatggttgcaaaatgttttat
agaggttctgttgagaccattcttcctcctaacagaaagtggagggctggtcgtttgtgc
acttctctaggagaaaaaataattgaaatagagaatgaagctgctgaaattaagaaaata
aactctgagaggttggattgcaaaggaaaattagttattgatcgagacaacatcaattca
aaattaagatcgttaaagagaaaaagagaagatgaggagcagcatctggagcgtaaaaag
gttcagttggatgacaccaagaaaatttctattgccaataagcatgatactgctgtggat
acctctgagctagaggctgaaatgatgcaagtgaaggaggacattgggaacaaagaatta
gttctggagaaaattaatttgaaacttacagatgctttgcgagaagagaatgataaaaga
gcttcttacaaagattttattgatattctctgctttcctgtggtaaattctctgcacata
ctaaatgcaaaatgctttactccagagtctgcacatgctgagatggggtctattagcgat
gctgagcatgaattgcagctcgttgaagaaaaaatacatgatgctcagcaggataaggct
cattatgaaggtgttatggaaatgaaggttttagctcctattcaaatgactgaatcggag
ttaacagatcttcaaaagcttcatcaggaatactttgaaaaggcttcaagaatatgtgca
gagagtgaagtggaagctttgggtggtgtcggaggatccaccctggaacaattaagtgat
tgtattaataaattgaatcagaaatttcagcaagaaagcagaagatataccaagaccatt
gatgatctgagagcattgcatgacaaaaagggacggaaaatattgagaaaacaacaaatg
tatgaaggttttaggggcaaattaaatgcatgtcaaaaggcattggacctacgatggagg
aagtttcagagaaatactggtcttttgaagcgccagcttacgtggctgttcaacgagcac
ttggggaagaaaggtatcagtgggcacatcaatgttcattataagaacgaagttctatct
gttgagctgacaatgcctcaagatgcatctcgtgatactgttagagatactagaggactt
tcaggtggagaacgatctttctcaaccctttgcttcaccctagctcttcatggaatgaca
gaagcaccatttagggccatggatgagtttgatgtattcatggatgcggtgagccgcaaa
ataagcttagataccctagtagattttgctgtggcacaggggtctcagtggatatttata
acccctcacgatatcagcatggtgaaggctggggataggatcaagaagcagcaaatggct
gcccctcgtggttga
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integrated database retrieval system
