Panicum virgatum (switchgrass): 120673098
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Entry
120673098 CDS
T07260
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120673098
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120673098
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120673098
03036 Chromosome and associated proteins [BR:
pvir03036
]
120673098
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
120673098
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
120673098
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
120673098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_RIG_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Me-amine-dh_H
ComGF
Motif
Other DBs
NCBI-GeneID:
120673098
NCBI-ProteinID:
XP_039809722
LinkDB
All DBs
Position
5N:43995262..44002454
Genome browser
AA seq
515 aa
AA seq
DB search
MNGAAAPERSPSASPPPPAPSQAPPPPPPSPTQPLEWRFSQVFGERSAGEEVQDVDIISA
IEFNKSGHHLATGDRGGRVVLFERTDVKDHACRKDAEKADYSISRHPEFRYKTEFQSHEP
EFDYLKSLEIEEKINQIKWCQAANSALFLLSTNDKTIKFWKVQEKKVKKVSEMNLDRTTA
PANGSPSGVGYLSPSLVNGNALKPGGFPLLRMPVVVTSQETSLAASCRRVYAHAHDYHIN
SISNNSDGETFISADDLRINLWNFEISSQSFNIIDVKPTNMEDLTEVITSAEFHPTHCNT
LAYSSSKGSIRLVDLRQSALCDTHSQIFEQHEAPGSRSFFTEIIASISDIKFSKDGRHIL
SRDYMTLKLWDVKMNSGPVVTFQVHEYLRPKLCDLYENDSIFDKFECCQSGDGLRVATGS
YSNIFRMFGVGTGSNEATTLEATRNPTRRQLQNPTRAARSLNTLTRAVRRGGENTGIDAN
GNSYDLSTKLLHLAWHPSENLIACAAANSLYMYYA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgccgcggcaccggagcgctcgccctcggcctcgcccccgccccctgccccg
tcccaggcgccgccgccgccgccgccctcgcccacccagccgctcgagtggaggttctcc
caggtgttcggcgagcgcagcgccggggaggaggtccaggatgttgacattatctcagca
atagagttcaataaatcaggacatcatcttgccactggggatagaggtggacgagttgtt
ttgtttgaaaggacagatgtcaaagatcatgcttgtagaaaagatgctgagaaagctgat
tattctatcagcaggcatcctgaatttcgctacaaaactgagtttcaaagccatgaacca
gagtttgattaccttaagagcttggaaattgaagagaagatcaaccaaataaagtggtgc
caagcagcaaatagcgcattgtttctgctgtcgacaaatgacaaaacaataaagttttgg
aaggtccaagaaaagaaggtaaaaaaggtatctgagatgaatttggaccgtacaactgct
cctgcaaatggtagtcctagtggtgtgggctatctgagcccatctctcgttaatggcaat
gctttaaagcctggtggatttccattgcttcgcatgcctgtggtagttacaagccaggaa
acaagtcttgccgcaagttgccgaagagtatatgctcatgcacatgactaccatataaac
tccatatcaaataatagtgacggtgaaacatttatatcagctgatgatttgcggataaat
ctttggaattttgaaatcagcagtcagagtttcaatattattgatgttaagcctacaaac
atggaggatctaactgaggtgataacatctgctgagttccaccctactcattgcaataca
ttagcttatagtagctcaaagggttccattcggcttgttgatctgcggcagtcagcactt
tgtgacactcattcacaaatctttgagcagcatgaggccccaggttcaagatcatttttc
actgagattatagcctcaatttcggacataaagttttccaaggatgggaggcatattctc
agtcgtgactacatgactctgaagctttgggatgttaagatgaattctggcccagttgta
acattccaggttcatgagtatctaaggcctaagttatgtgatttgtatgaaaatgactca
attttcgacaaatttgaatgttgtcaaagtggtgacggattacgagtagcaactggttcc
tacagcaacattttccgcatgtttggtgttggtactggtagcaatgaggcaacaacactt
gaagcaactcgaaacccgacaaggagacagctccagaatcccacaagggctgccagatcc
ctgaatactctgacaagggctgttagacgaggtggagaaaacactggaatagatgccaat
ggaaattcctatgacctcagcacaaagttgctccatttggcttggcacccatctgaaaat
ctaattgcgtgtgctgcagccaacagcttgtacatgtactatgcataa
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