Panicum virgatum (switchgrass): 120673103
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Entry
120673103 CDS
T07260
Name
(RefSeq) DNA mismatch repair protein MLH1-like
KO
K08734
DNA mismatch repair protein MLH1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03430
Mismatch repair
pvir03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120673103
03460 Fanconi anemia pathway
120673103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120673103
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120673103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120673103
NCBI-ProteinID:
XP_039809728
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Position
5N:71086214..71092468
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AA seq
724 aa
AA seq
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MDVDEPSPRVGGGGADPPRIRRLEESVVNRIAAGEVIQRPSSAVKELVENSLDAGASTVS
VTVKDGGLKLIQVSDDGHGIRFEDLPILCERHTTSKLSAYEDLQTIKSMGFRGEALASMT
YVGHATVTTITEGQLHGYRVSYKDGVMENEPKPCAAVKGTQVMVENLFYNMVARRKTLQN
SNDDYPKIVDFISRFAVHHINVNFSCRKHGANRADVHSASTSSRLDAIRNVYGASVVRDL
MEIEVSDENAGDAVFKMDGYISSANYVAKKITMILFINGRLVDCTSLKRAIEFVYSATLP
QASKPFIYMSINLPPEHIDVNIHPTKKEVSLLNQERIIEIIKNTIEEKLRNSNTTRIFQT
QAVNPSALTQANMQKEKGTEVKMSSGMKSQKNPVSQMVRTDPRDPSGRLHTYWHGQSSNH
EKKYDLVSVRNVVRSRRNPKDACDLSSRHELLTEVDSNCHPGLLDVIKNCTYVGLADEVF
ALIQHNTRLYLVNVVNVSKELMYQQALCRFGNFNAIQLSEPAPLRELLLMALKDDELMGD
ENDEEKLEIAEVNSEILKENAEMINEYFSIHIDKDGNLTRLPVVLDQYTPDMDRLPEFLL
TMGNDVTWDDEKECFRTAAAAIGNFYALHPPILPNPSGSGIQLYKKNKDCMASGEHVDNT
DEDDIDQELLAEAETAWSQREWTIQHVLFPSMRLFLKPPKSMATDGTFVQVASLEKLYKI
FERC
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgatgagccgtcgccgcgcgtcggcgggggcggcgcggaccctccccgcatc
cggcggctggaggagtcggtggtgaaccgcatcgcggccggggaggtgatccagcggccg
tcgtcggcggtgaaggagctcgtcgagaatagcctcgacgccggcgcctccaccgtctcc
gtaaccgtcaaggacggaggactcaagctcatacaggtctccgacgatggccacggcatc
cggtttgaggatttgccaattttgtgcgaaaggcatactacctcaaagttatccgcatat
gaggatttacagacaataaagtctatggggttcagaggggaggccttggccagtatgact
tatgtcggccatgctactgtgacgacgataacagagggacaacttcatggctaccgcgtt
tcttataaagatggcgtaatggagaatgagccaaaaccctgtgctgcggttaaaggaact
caagtcatggtggaaaatttattttacaatatggtagctcgtaggaaaacattgcagaac
tccaatgatgactaccccaagattgtggacttcattagtcggtttgcagtccatcacatc
aacgtgaacttctcctgcagaaagcatggagccaatagagcagatgtgcatagtgcgagc
acatcttctaggctggatgctataaggaatgtctatggggcttctgtcgttcgtgatctg
atggaaatagaggtttcagatgagaatgctggagatgcagtcttcaagatggatggctac
atatcaagtgcaaattatgtggcaaagaagatcacgatgatccttttcataaatggcagg
cttgtagactgcacttctctaaaaagagctattgaatttgtgtactctgcaacattacct
caagcatccaaacccttcatatacatgtccatcaatcttccaccagaacacattgatgtc
aatattcacccaaccaagaaagaggttagcctcttgaatcaagagcgtattattgaaatt
attaaaaatactattgaggaaaagctgaggaattctaataccacaaggatattccaaact
caggcagtaaacccctcagcacttactcaagctaacatgcagaaggaaaagggtactgag
gtcaaaatgtcctctggaatgaagtctcaaaaaaatcctgttagccaaatggtcagaact
gatccacgcgatccatcaggaaggttgcacacttactggcatgggcaatcttcaaatcat
gaaaagaaatatgaccttgtttctgtaagaaatgttgtaagatcaagaagaaacccaaaa
gatgcttgtgatttatccagtcgtcatgagcttcttacagaagtagattccaactgccat
cctggtctgttagacgttattaagaattgcacatatgttggactggctgacgaagttttc
gctttgatacagcacaatactcgcttataccttgtcaatgttgtaaatgttagtaaagaa
ctcatgtaccagcaagcactctgccgttttggaaacttcaatgctatacagctgagtgaa
ccagctcctcttcgggagctgctactgatggcactgaaggatgatgaactaatgggtgat
gaaaatgatgaggagaaactggaaattgcagaagtaaactccgagatactgaaagaaaac
gccgagatgattaatgagtacttctcaatccatattgataaagatggaaacctgactagg
cttccagttgtacttgatcagtacactcctgacatggatcgtctcccagaatttttgttg
actatggggaatgatgttacttgggatgatgagaaagagtgcttcaggacggcagctgct
gcaattgggaacttttatgctctccatcctcccatcctaccaaatccatctgggagtggc
attcaattgtacaagaaaaataaagattgcatggcaagtggtgaacatgttgataataca
gatgaagatgatattgatcaagaactacttgcggaagcagaaactgcatggtcccaacga
gagtggaccattcagcatgtcttgtttccatccatgcggcttttcctaaagcccccaaag
tcaatggcaacagacggaacatttgttcaggttgcttctctggagaagctttacaagatt
tttgagagatgttag
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