Panicum virgatum (switchgrass): 120673149
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Entry
120673149 CDS
T07260
Name
(RefSeq) farnesyl pyrophosphate synthase-like isoform X1
KO
K00787
farnesyl diphosphate synthase [EC:
2.5.1.1
2.5.1.10
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00900
Terpenoid backbone biosynthesis
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Module
pvir_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
120673149
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pvir01006
]
120673149
Enzymes [BR:
pvir01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
120673149
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
120673149
Prenyltransferases [BR:
pvir01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
120673149
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
Pfc11_Rna14-15-ID
Motif
Other DBs
NCBI-GeneID:
120673149
NCBI-ProteinID:
XP_039809794
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All DBs
Position
5N:complement(55804176..55808782)
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AA seq
355 aa
AA seq
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MATAGVAVANGSGGADTRAAFKEIYSTLKEEMLEDPAFEFTDESLQWIDRMVDYNVLGGK
CNRGLSVIDSYKILKGVDVLSKEETFLACTLGWCIEWLQAYFLVLDDIMDNSQTRRGQPC
WFRVPQVGLIAVNDGIILRNHISRILQRHFKGKPYYVDLIDLFNEVEFKTASGQLLDLIT
THEGEKDLSKYNLTIHRRIVQYKTAYYSFYLPVACALLLAGENLDNFGDVKNILVEMGTY
FQVQDDYLDCFGDPEFIGKIGTDIEDYKCSWLVVQALERTDEDQKKILFENYGKSDPACV
AKVKDLYKELNLVEVFHEYERESYNKLTADIEAQPNKTVQTVLKSFLHKIYKRDK
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggcgggggtggcggtggccaacggctccggcggcgccgacacgagggccgcg
ttcaaggagatatacagcacgctcaaggaggagatgctcgaggaccccgccttcgagttc
accgacgagtcgctccagtggatcgaccgcatggttgattacaatgtgctcggaggaaag
tgcaaccgcgggctctcagtcattgatagctacaagatattgaagggtgtcgatgttctg
agcaaggaggagacatttctggcctgcacccttggttggtgtattgaatggcttcaagct
tattttctggtgcttgatgatatcatggacaactcccagacacgacgtgggcagccttgc
tggtttagggtgcctcaggttggcctcattgctgtaaatgacgggattatccttcgcaat
catatttcacggatccttcaacgccacttcaaaggaaagccctattatgttgatctcatt
gatttgttcaatgaggttgagttcaagactgcttcagggcagttgttggatcttatcact
actcatgagggtgaaaaggacctaagtaaatataacttgacgattcaccgacgcattgtt
cagtacaagacagcctactattcattttatctccctgttgcatgtgcactgctgctggct
ggtgagaacttggataactttggtgatgtaaagaacattcttgttgaaatgggaacatat
tttcaagtccaggatgattatctagattgttttggtgatcctgaattcattggcaagatc
ggaactgatattgaagactacaagtgttcttggttagttgtgcaagctcttgaacgtact
gatgaggaccaaaagaaaatcctatttgaaaattatgggaagtccgatccagcatgtgtt
gcaaaggtgaaagacttgtacaaagagcttaatctggtggaggttttccatgagtacgag
agggagagttacaacaagctgacggccgacatcgaggcccagccgaacaagacggttcag
accgttctgaagtccttcctgcacaagatctacaagagggacaagtag
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