Panicum virgatum (switchgrass): 120673162
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Entry
120673162 CDS
T07260
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120673162
03015 mRNA surveillance pathway
120673162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120673162
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120673162
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
DnaX_C
Motif
Other DBs
NCBI-GeneID:
120673162
NCBI-ProteinID:
XP_039809818
LinkDB
All DBs
Position
5N:71094328..71098924
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AA seq
427 aa
AA seq
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MAKPRRGRSASRSSSGSSSRSPSRSVSSGSVSSRSRSRSRSFSSSSSQSRSRSPPPHKRS
SSGARKGQSPSPPPKKGSPSKKVRSPSPPPKKASPPRKASPPAESAVLCIDHLSRNVNES
HLKEIFGNFGEVVNVELSMDRLVNLPRGYGYVEFKKRADAEKALLYMDGGQIDGNVVKLR
FTLQPRQRAASPTKVPPPPKRDAPPNDKGASSAEKDAQQRPRESSPRKKPASPPRKRSPP
NRRVESPRRPPDPSPRRRPDSPPIRRRPDPSPVRRGDTPPRRRPLSPLRRRSPSPPRRHR
SPMRPSPRRGRGSPSPRRRSPGPLRRRSPPPRRLRSPPRRPPPPRRYSRSPPPRRPLRSR
SRSISPRRGRGPPLRRGRSDSSYSRSPSPPRKGPRRVSRSRSPRRPPRGRSISSDSRSSS
SPSPRRR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctcggcgcggccgctccgcctcgcgctcttcctcgggctcctcctcccgc
tcgccgtcccgctccgtctcctccggctccgtctcgtcccgctcccggtcgcgctcccgc
tccttctcgtcctcctcctcccagtctcggagccgctcccctcccccacataagcgcagc
tcatcgggagcaaggaaaggtcaatcaccttcaccacctcctaaaaaaggttcaccctca
aagaaagtccgttcaccatcaccaccgcctaaaaaggcttcaccccctaggaaagcatct
cctcctgctgagtctgctgttctctgcattgatcatttatcaaggaatgttaatgagtct
catttgaaagagatttttggaaactttggcgaagtggttaatgtggagctatcaatggat
cgattggtcaatcttcctcgcgggtatggttatgttgaattcaagaagagagctgatgcc
gagaaagctcttctttacatggatggtggtcaaattgatggaaatgttgttaagttgcga
tttacacttcaaccacgccaaagggctgcatcacctacaaaggttcctccccctccaaaa
agagatgctcctccaaatgacaaaggtgctagcagtgctgaaaaggatgcccagcagcgt
cctagggaatcatctccacgaaagaagcctgcctcacctccacggaagcgatctcctccg
aatcgaagggtcgagtcacccaggcgtccacctgacccatcacctaggcgtcgtcctgat
tctccaccaattcgtcgccgccctgatccttctcctgtcaggcgtggtgacacacctcct
cgcaggagaccactatctccacttaggaggcgttctccttctccaccacgaaggcatagg
tcaccaatgaggccttcacctaggaggggtcgtggtagcccatcaccacgcagacgctcc
cctgggcctcttaggaggcgatcaccacctccaaggcggttgaggagcccaccaagaagg
ccaccgcctccacgtcgttatagtcgttctcctcctcctcgccgtcctcttcgatcccgc
tctagatcgatttctccaagaaggggtcgaggacctccattgaggcgtggaaggtcggac
tcatcatattctcgatcacctagtccaccaagaaaggggccaagaagggtatcaaggagt
cgcagccctagaaggcctcctagaggaagaagcatctctagtgacagccgaagcagcagc
tcaccttcccctagacgcaggtag
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