KEGG   Panicum virgatum (switchgrass): 120673184
Entry
120673184         CDS       T07260                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03010  Ribosome
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    120673184
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120673184
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:pvir03011]
    120673184
   04121 Ubiquitin system [BR:pvir04121]
    120673184
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pvir04147]
    120673184
Ribosome [BR:pvir03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    120673184
  Archaea
    120673184
Ubiquitin system [BR:pvir04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   120673184
Exosome [BR:pvir04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120673184
  Exosomal proteins of colorectal cancer cells
   120673184
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Dsc3_N Plexin_RBD Thioredox_PDIA6_C DUF2604 UBL_UBAC1 TBK1_ULD Fer2_3 Ubiquitin_5 OTU1_UBXL
Other DBs
NCBI-GeneID: 120673184
NCBI-ProteinID: XP_039809847
LinkDB
Position
5N:complement(20070666..20071485)
AA seq 155 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRK
ECPNTECGAGTFMANHFDRHYCGKCGLTYVYNQQA
NT seq 468 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagacgctgacggggaagaccatcacgctggaggtggaatcctcg
gacaccatcgacaacgtgaaggccaagatccaggacaaggagggcatcccgccggaccag
cagcggctcatcttcgccggcaagcagctggaggacgggcgcaccctcgccgactacaac
atccagaaggagtcgacgctgcacctggtgctccgcctccgcgggggagccaagaagcgc
aagaagaagacgtacaccaagcccaagaagatcaagcacaagcacaagaaggtgaagctc
gccgtgctccagttctacaaggtggacgacgccaccggcaaggtcacccgcctccgcaag
gagtgccccaacaccgagtgcggcgcggggaccttcatggccaaccacttcgaccgccac
tactgcggtaagtgcggcctcacctacgtctacaaccagcaggcgtag

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