Panicum virgatum (switchgrass): 120673214
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Entry
120673214 CDS
T07260
Name
(RefSeq) E3 ubiquitin-protein ligase SIS3-like isoform X1
KO
K16284
E3 ubiquitin-protein ligase SIS3 [EC:
2.3.2.27
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120673214
Enzymes [BR:
pvir01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120673214
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120673214
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-rbx1
zf-RING_5
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
120673214
NCBI-ProteinID:
XP_039809896
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Position
5N:36565413..36572357
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AA seq
374 aa
AA seq
DB search
MAMRGVDFKWYDGFFLSMLATSVIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFL
DNGLAAGMGLDLGWQQRYARFCGRIIVLSVLVLLLYPFLWVWTVIGTLWFSTARGCLPEE
GQKWGFLIWLLFSYCGLACIACVAVGKWLNRRHALQQRAQQGIPVSEYGILVDMIRVPDW
AFEAVGLEMRVGQDTAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEF
HVGNEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSALNNLRSTSEPDHPSA
SASDVTTATAATRYVRSQPAGQSYLVRLQGLLLRPVRHESMESGGEPAVANSSSVDPEEL
SSIVVDDGHQLPDR
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgcggggcgtcgatttcaagtggtacgatgggttcttcctctcgatgctcgcc
actagcgtaatcattgtctccatcaattggaagaggtatcgcctctgcgcccatccgctc
cacatttggatagtggtggactacaccactgtcttcatcttccgtctcctcatgtttctt
gataatggtcttgctgcagggatgggattggatctcggatggcaacagagatatgctcgc
ttttgtggaagaataattgtcctttcagttcttgtactacttttatacccctttctttgg
gtttggactgtgataggaacattgtggtttagcactgcaagaggctgcttgcctgaggaa
ggacaaaaatggggcttcctgatatggctgctgttcagttactgtggactcgcctgtatt
gcttgtgttgctgttggaaagtggctaaaccgaaggcacgcacttcaacaaagggcacag
cagggaattcctgtctctgaatatgggattttggttgatatgatccgtgttcctgactgg
gcatttgaggctgttggcctggaaatgagagtgggccaagatacagcatatcatccaggt
ctttacttaactgcagctcagagagaagcagttgaggcactgattcaagaacttccgaaa
ttcaggctgaaagctgttccaaccgactgcagtgaatgtcccatctgccttgaagaattt
catgttggcaatgaggtgcgtgggctcccatgtgcgcacaatttccatgtggagtgcatc
gaccaatggctccggctgaatgttaagtgcccacggtgccgatgctccgtcttccccaac
ttggacctgagcgcactgaacaatcttcggtcaaccagcgaaccagatcatccatccgcc
agtgccagcgatgtaacaacagcaactgcagcgactagatacgtgaggtcacagccggct
gggcaaagctacttggtgcggttgcaggggctgctgctccgtccagtccggcacgagagc
atggagagtgggggtgagccagctgtggccaacagcagctcggttgaccctgaggagctg
tccagcatagttgtagacgatggccatcagctaccagatcgctga
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