KEGG   Panicum virgatum (switchgrass): 120673220
Entry
120673220         CDS       T07260                                 
Name
(RefSeq) splicing factor U2af small subunit B-like isoform X1
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120673220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pvir03041]
    120673220
Spliceosome [BR:pvir03041]
 Complex A
  U2 snRNP components
   U2 related factors
    120673220
 Complex B
    120673220
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4
Other DBs
NCBI-GeneID: 120673220
NCBI-ProteinID: XP_039809906
LinkDB
Position
5N:complement(50507506..50510960)
AA seq 253 aa
MNGLLISWTYSESWRSTWLRYLVQKKIGACRHGDRCSRLHNRPTISPTLVLVNMYQHPDM
ITPGVDAQGQPIDPRKMQEHFEDFYEDIFEELSKFGEIENLNVCDNLADHMIGNVYVQFR
EEDQAAAAHTALQGRFYSGRPIVVDFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQIN
RDLRKKLFGRYRRPNRGRSRSPSPHHRSVRRDRDDYRGGGGGGSRGHDYHGGGGRDRDDY
HGGGGGRRGGGSR
NT seq 762 nt   +upstreamnt  +downstreamnt
atgaacgggcttctaattagttggacctattctgaatcatggcggagcacttggcttcga
tatttggtacagaaaaagattggggcttgccgccatggggatcgttgctcccgtctgcat
aataggccaaccatatcaccgactcttgtgctggttaacatgtatcaacaccctgacatg
atcacccctggggttgatgctcaaggccagccaattgatcctcgcaagatgcaggagcat
tttgaagatttttatgaggatatctttgaagaactgagcaaatttggtgagattgagaac
ctcaatgtctgcgacaaccttgctgatcacatgataggcaatgtctatgtccaattcagg
gaggaagatcaggcagctgcagctcatacagcccttcagggccgcttttactctggccgc
ccgattgttgtcgacttctccccagttactgattttcgtgaagcaacctgcagacagtat
gaggagaacagctgcaatcgtggtggatattgcaattttatgcatgtgaagcagattaat
agggatctgaggaaaaagctctttgggcgttacaggagaccaaacaggggaaggagccgc
agccctagcccacatcacaggagtgtgcgtcgtgaccgagatgattaccgtggcggtggt
ggcggcggcagccgtggccacgactaccatggtggcggtggtcgtgaccgtgatgactac
catggtggcggtggtgggcgcaggggtggaggcagcaggtag

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