Panicum virgatum (switchgrass): 120673270
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Entry
120673270 CDS
T07260
Name
(RefSeq) tRNase Z TRZ3, mitochondrial-like
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pvir03016
]
120673270
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
120673270
Transfer RNA biogenesis [BR:
pvir03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
120673270
Prokaryotic type
120673270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B
TVHS-like
Motif
Other DBs
NCBI-GeneID:
120673270
NCBI-ProteinID:
XP_039809968
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All DBs
Position
5N:complement(907936..920956)
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AA seq
1540 aa
AA seq
DB search
MPQVPAPLRLLLPLSQTLAPCPLLHLSRRLFTSSSFGRAASLRALAYRRHHPPRRGNSTL
RKAPKEEMAGGGDKEVAFNRKRAEGRDVGKRGSMELKARKLNPVNTTCYVQILGTGMDTQ
DTSPSILLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLTRVCSETAGGLPGLVLTL
AGIGDEGMSVNIWGPSDLDFLAGAMRSFIPNRAMLHTHSFGAEWNASSSQPKDSVVILND
EVVRISAMFVKPRYPNGAGSLNDIDMKPGDTAIVYVCELPEIKGKFDPAKAAALGLRPGP
KYRELQLGNSVQSDQFDEMVHPSDVLGPSIPGPAVLLVDCPTQYHMPELFSLQSLSCFYE
DSSNQRESGKKVNCIIHLGPSSVTKSVDYQNWMKRFGETQHIMAGHEIKNMEIPILKGSA
RISSRLNFVCPQLFPSSGFWSVKPANDVMENDKSTSLEACGIVSAQNLLKFHLRPYAQLG
LDSASIPSSFTYKDIVKELVSEIPEVREVPEQVLKFWQNNANVKNIQPAGSLMLMVEETW
IGQKSAKLDGSPKHPRDNQEIPCCVEDASREDMEITFLGTGSSQPSKYRNVSSVYINLYA
QGGILLDCGEGTLGQLKRRFGVNGADEAVKNLRCIWISHIHADHHTGLARVLALRSKLLK
GMPHKPLLVIGPRPLERFLSAYSTLEDLDMQFLDCRNTLKPSVKAFLSENVTGSATPQLE
NTMFAPGSRMENYNRKPASPRDTTALANFKEVLQESGLEILYSVPVVHCPQAFGVVLRAT
EKVNSAGKVIPGWKVVYSGDTRPCPALIDASRDATVLIHEATFEDSMKDEAIARNHSTTK
EAIEVGTSAGAYRIILTHFSQRYPKIPVIDEVDMEKTCIAFDLMSVNLADLPVLPKVLPH
LKVLFKDEMVVEEADEIQEAAALRLIKYAVGKSGNDFKREMQRHSAAMRQLVHYKGHPDP
LRGDALNKAVRETANEAIAAIFSTEDPKPAVATESLGKRIQGFGNTNYEPSRIDDKKSFL
SELSEVVGIGSASIKQGLSNFAAAHAMMTNDNGATYKSPNLRRSLTTESERYGRYDPSEI
QSESRTSSGASKNVASGSWGPTPSSSAPTDETSSSQPGIKTREERLLETIVTASGVRLQP
TRDALQIFLTEASKLDAVALSRALENKLNSPLWQVRMKAICVLEAIVRKQDTDPYSIVAS
YFIENTASVVKCSELPQVSLREKASKVLNMLIGEQPNGTTNLSATKTPMPPPVQMPDLID
TGDQDDLGTQSSGQESNGQNTGNSAHVSSVDDLLGGEPIADISVTADSNGSDPFADVSFH
EAETKETNDLFSGLTVEEKSSAAMHDSSSSNKNELPDIFGSNPDPFAQGNVTDQGTVNDL
MAGLNLNGTGQAQPAVKAELNSNLNGSQFFDANNQTSHLAGAAALNGILGQNSFYQQQQV
PLQYSLPQHMMLNQSFPGQQLNYGAMGILLAQQQQLLQNFGNFNAGLGSSSFNSMNSGNA
SVLPDIFNSSNQPQNHVAVMSNSKKDDTKAFDFVSVCISI
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtgcccgcccctctccgcctcctcctccccctctcccaaaccctagccccc
tgccccctcctccacctctcgcgccgcctcttcacctcctcctccttcgggcgcgccgcc
agcctccgcgccctcgcctaccgccgccaccacccgccccgccgcgggaatagcacgctc
cggaaggcgcccaaggaggagatggctggaggaggggataaggaggtggccttcaacagg
aagcgggcggaggggagggacgtcgggaagcgcgggagcatggagctgaaggcccgcaag
ctcaaccccgtcaacaccacctgctacgtgcagatacttggtacagggatggacacccag
gacacttcaccttctattttactcttctttgacaagcaaaggtttatatttaatgcaggc
gagggtcttcaacgtttctgtactgaacacaagataaagttatcaaagattgaccatatc
tttttaactcgggtgtgctcagaaactgcagggggccttccaggcctggtgctaaccctg
gcaggcataggagatgagggcatgtcggtgaacatatggggcccttctgatcttgacttt
ctagccggggcaatgagatcttttataccaaatagagcaatgcttcacacacatagcttt
ggtgctgaatggaatgcatcttcttcacaacctaaagactctgttgttattcttaatgat
gaagtagttaggatatcagcaatgtttgtcaaaccaaggtacccaaatggagctggtagc
ttgaatgatatcgacatgaaaccaggtgatactgctatagtctatgtgtgtgaattgcca
gaaattaagggaaagtttgaccctgctaaggctgctgcccttggtctgaggcctgggccc
aagtatcgagaacttcaacttgggaactctgtgcagtctgatcagttcgacgaaatggtt
catccaagtgatgttcttggcccgtcaattcctggaccagctgttcttctggtggattgc
cctacacaatatcatatgccagaacttttctcactgcaatcccttagctgcttttatgaa
gactcttcgaaccaaagagagagtggcaagaaagtaaattgcataatccacttaggtcca
tcctccgttactaaatctgttgactatcagaactggatgaaaagatttggtgaaacacag
catatcatggcaggacatgaaattaaaaacatggaaattccaatcttgaaaggtagtgca
agaatatcatcgcgcctcaattttgtatgccctcagctattcccatcctctgggttttgg
tctgttaaacctgcaaatgatgtcatggagaatgataagagtacttcattggaagcctgt
ggaattgtgtctgcgcaaaatctgctcaagtttcatctgcgtccatatgctcaactgggg
ttggatagtgcttctattccaagttcgttcacgtacaaggatattgtaaaagagcttgta
tctgagatcccagaggttagggaagttcctgaacaggttctcaaattctggcaaaataat
gcaaacgtcaaaaatatacaaccagcaggcagtcttatgctgatggttgaagagacatgg
atcggtcagaaatcagctaagctagatggtagcccaaagcatccacgggacaatcaggag
atcccttgctgtgtggaggatgcatcaagggaagatatggagattacatttttgggtaca
ggttcatctcagccttcaaaatatcggaatgtaagttctgtatatattaacttgtatgct
caaggaggtatacttcttgattgtggtgaaggaactttaggacaactaaagaggaggttc
ggtgtaaatggtgctgatgaagctgtaaaaaatttgaggtgtatttggatttcgcatatt
catgctgatcaccacacagggttagctagagttcttgctctaaggtctaaattgttaaaa
gggatgcctcataaacccttgcttgtgattggaccaagaccacttgagagattcctgagt
gcttattcaactcttgaagatcttgacatgcaattcctagactgcaggaatactctgaag
cctagcgtcaaggcttttctcagtgaaaatgttactggatcagccacacctcaactagag
aacaccatgtttgcccctggaagtagaatggagaactacaacaggaagcctgcaagtccc
agggataccacagctcttgctaattttaaagaagttctgcaggaatcaggcttggagatt
ctgtacagtgtccccgtagtacactgtccacaggcatttggtgttgtgttgagagccaca
gagaaggtgaacagtgctggaaaggttattccaggctggaaagttgtatattctggtgac
acacgaccctgtccagctcttatagatgcatccagagatgcgacagtgctaatacacgag
gcaacatttgaggacagtatgaaggacgaagcaatcgcgaggaaccatagcacaacaaag
gaggcaatagaagtaggcacatcagctggagcataccggatcattttgacccacttcagc
cagcgatacccaaaaatcccagttattgatgaggttgacatggagaagacgtgcattgcc
tttgacctgatgagcgtaaaccttgcggatttgcctgtcttgcccaaggtcctgccacac
ctgaaggtcctattcaaggacgagatggtagttgaggaagctgatgagatccaagaggct
gctgccttacggctgatcaaatacgcagtaggaaaatctggtaatgatttcaagagggag
atgcaacggcattcagcggctatgcgccaactagttcactacaagggccaccctgatccc
ttaagaggagatgcccttaataaggctgtccgcgaaactgcgaacgaggctatagctgca
attttctccacagaggatcctaaacctgcagttgcaacagagagtcttggcaagcgcata
cagggctttggaaatactaactatgagccatctagaatagatgacaagaagtctttcctt
agtgaactcagcgaggtagtgggtattggaagtgcatctattaagcagggtttgagcaac
tttgctgcagcacatgcaatgatgacaaatgataatggtgccacatacaagagccctaac
cttcgtagatctttgaccacagaatctgaaagatatggtcggtatgatccaagtgaaatt
caaagtgagagtcgtacctcatctggtgcttcaaaaaatgtggcttctggttcttggggt
ccaactccttccagttctgcaccaactgatgagactagctcaagtcaaccagggattaag
actcgtgaagagagacttttggagacaattgttactgctagtggtgtgcgattgcaacca
acgcgagatgctctccagatatttttaacagaagcttccaaattggatgcagtcgctttg
agccgtgcacttgagaacaaactgaattctccattatggcaggttcgtatgaaggctatt
tgtgtgttggaagccattgtgcggaaacaggatactgatccttattctatcgtcgcttca
tatttcattgagaacacagcttctgttgttaaatgctctgagctgccacaggtttctctt
agagagaaggcctcaaaggttttgaatatgctgattggggaacaacctaatggaaccaca
aatctttcagcaacaaaaactccaatgcccccaccggttcagatgcctgatttaattgat
acaggtgatcaagatgatctaggaactcaaagttctggacaggaaagcaatggacagaac
actgggaacagtgcacatgtttcttcagttgatgatttgcttggtggtgaacctattgct
gatataagtgtcactgctgatagtaatggaagtgatccatttgcagatgtatcattccac
gaggcagagactaaggagaccaatgatctgttctcggggttgacagtagaagagaaatca
tcagctgccatgcatgatagctcttcatcaaacaaaaatgaattaccggatatctttggc
agtaaccctgatccttttgcccaaggaaatgttactgaccaaggaactgtcaatgatttg
atggctggtttgaaccttaatggaacaggccaggctcaacctgctgttaaagcagagctc
aatagcaacctcaatggctcacagttctttgatgcaaataatcagactagccacttggca
ggtgctgcagcattgaatggcattctcggtcagaactccttttatcaacagcaacaggtt
cccttgcagtacagcttgcctcaacatatgatgctcaatcagtcatttcctgggcaacaa
ttaaattatggtgccatggggattcttcttgctcagcagcagcagctactgcaaaatttt
ggaaatttcaatgctggtcttgggagttcatctttcaattctatgaacagtggaaatgca
tcagtgcttccagatattttcaattcaagcaatcaaccacaaaatcatgttgcagtgatg
agcaattcaaagaaagatgacactaaagcttttgattttgtctcggtatgtatttctatc
tag
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integrated database retrieval system
