Panicum virgatum (switchgrass): 120673295
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Entry
120673295 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
pvir03015
mRNA surveillance pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120673295
09122 Translation
03013 Nucleocytoplasmic transport
120673295
03015 mRNA surveillance pathway
120673295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120673295
03041 Spliceosome [BR:
pvir03041
]
120673295
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120673295
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120673295
Spliceosome [BR:
pvir03041
]
Complex C
Other components
EJC/TREX
120673295
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120673295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120673295
NCBI-ProteinID:
XP_039810002
LinkDB
All DBs
Position
5N:21457403..21462560
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AA seq
495 aa
AA seq
DB search
MVEAKDNEVYEEDLVDYEEVENVADGATTNGSADVVKKGYVGIRSSGFRDFLLKPELLRA
IQDCGFEHPSEVQHECIPQAILGIDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVL
CHTRELAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNECPHIVVGTPGMILAL
ARDKDLPLKNVWHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAILSKEIRPVC
KKFHARCNPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNWKLNDLLDVLDLNQVVVIFVKS
VSRAAELNKLLGECNFPSICIHSGMMQEERLTRYKNFKEGHKGILVATDLVGRGIDIKRV
NIVVNYDMPDSADTYLHRLIVAHLLQGWAGFTILSSLFDAFAASLHICGGKAGFCYPFPR
TPLKWEPPGTGSAFFFLMHLPLQVGRAGRFGTKGLAITFVSSASDSDVLSQVQERFEVDI
KALPDQIDTSIYMPS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggtggaggcgaaggacaacgaggtgtacgaggaggatctcgtcgactacgaggaggtg
gagaatgtcgccgacggcgccacaaccaacggctccgccgatgtcgtcaagaaggggtac
gtggggatccgcagctcggggttcagagacttcctgctcaaaccggagcttctccgtgcc
atccaggactgcggatttgagcatccttccgaagtgcaacatgaatgcatccctcaagcc
attcttggaatagatgttatctgtcaagcaaagtcagggatgggtaagactgcggttttt
gtcctatcaactcttcagcagattgatcctgttgctggccaagtagctgcacttgtgttg
tgccacacaagagagttagcttaccagatttgccatgaatttgagagatttagcaaatac
ctgcctgaattaagagtcgctgtcttctatggtggtgttcacataaaaaatcataaggat
ctgttgaagaatgaatgcccccatattgtggttggcacgcctggaatgatacttgctcta
gctagagataaggaccttcccttgaagaacgtgtggcatttcattctcgacgaatgtgat
aagatgcttgaatcacttgacatgcgtagagatgtccaggagatcttcaaaatgactcct
catgataagcaagtgatgatgttttcagcaatcctcagcaaggaaattcgcccagtttgc
aagaagttccatgcaagatgtaatcctatggaaatttatgttgatgatgaggctaaactg
acccttcatggtctagttcagcactacatcaaattgagtgaggcagagaagaattggaag
ttgaatgatctcttagatgtgctcgacttaaaccaagttgttgtgatatttgtcaaaagt
gttagtagagctgcagagctgaacaagttgctcggtgaatgcaatttcccctcaatctgc
atacattctggaatgatgcaggaagagaggttgacccgatacaagaacttcaaggaagga
cacaaggggattcttgtggctaccgatttggtcggtaggggaattgatattaaacgtgtc
aacattgttgtaaactatgatatgccagattctgctgatacctacttgcataggttaatt
gttgcacacctcttgcaaggctgggctggttttaccattttgtcatctctttttgatgca
tttgcagcctccctgcatatttgcgggggtaaggctggcttctgttaccccttccccaga
accccactcaagtgggagccgcctggcactgggtctgcctttttttttttgatgcatttg
ccattgcaggttggtcgggctggacgttttggcaccaagggacttgcaataacatttgtt
tcttctgcatccgattccgatgttctcagtcaggtgcaagaaaggttcgaggttgacata
aaggcgctgcctgatcagattgacacttcaatatacatgccatcttga
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