Panicum virgatum (switchgrass): 120673314
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Entry
120673314 CDS
T07260
Name
(RefSeq) 25.3 kDa vesicle transport protein-like isoform X1
KO
K08517
vesicle transport protein SEC22
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04130
SNARE interactions in vesicular transport
pvir04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
120673314
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120673314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120673314
Membrane trafficking [BR:
pvir04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Sec22
120673314
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Gene cluster
GFIT
Motif
Pfam:
Longin
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
120673314
NCBI-ProteinID:
XP_039810025
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Position
5N:complement(41800945..41805317)
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AA seq
246 aa
AA seq
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MVKLTMIARVTDGLPLAEGLDDGRDQKDADFYKQQAKLIFKNLSKGHHEASRMSIETGAY
FFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGNQIETAARPYAFIKFGMVP
EFTRQHYCFILTSDCLIACFFFCLDTFIQKTKKLYLDTRTQRNLAKLNDELYEVHQIMTR
NVQEVLGVGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQALIRKYAPVAIVIGVVFILFW
LKNKIW
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagctgaccatgatagcgcgtgtcactgatggccttccactggcagaagggttg
gatgatgggcgagatcagaaggatgctgatttctacaagcagcaagctaaacttattttt
aagaacttgtcaaaagggcatcacgaagcttcccggatgtcaattgagacaggggcctac
tttttccactacatcattgaaggccgagtatgttatctgactatgtgtgaccgttcttac
ccaaagaaacttgcattccagtacctagaagatctgaaaaatgaatttgagagggtcaat
ggcaatcaaatagaaactgctgcaaggccatatgcatttatcaagttcggtatggttcct
gagttcactcgccagcattattgtttcattcttacttcagattgcttgatagcatgtttt
tttttctgtttagatacattcatccagaagactaagaaactgtatttggatacaagaact
caaaggaaccttgcaaaactgaatgatgagctctatgaggtgcatcaaattatgacccgc
aatgttcaagaggttcttggtgttggtgaaaagctagaccaggtcagtgaaatgtcaagt
agattgacatctgacacaagaatatacgcagataaggcaaaggacctcaatcgacaggcc
ttgatccggaagtatgctcctgttgcgatcgtgattggggtagtcttcattctcttttgg
ctgaaaaacaagatatggtga
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