Panicum virgatum (switchgrass): 120673317
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Entry
120673317 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP62-like isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120673317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120673317
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120673317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
COG3_N
Flagellar_rod
SGT1
Motif
Other DBs
NCBI-GeneID:
120673317
NCBI-ProteinID:
XP_039810030
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All DBs
Position
5N:complement(64359976..64369781)
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AA seq
760 aa
AA seq
DB search
MATSFGFGGSAAAGSTASSPFSFSSTPSAFSFSQPAAASSPAPAFGSSLFSSSAAASSAP
TFGSSLFGASSAAAPASTAASPFGFGSTGFSFGQSTAAASSAAPAPSLFGATAAASPAGT
TPSIFGAATSAASSPGLFGAASAPASSPGLFGASAAGSATSTPGLFGATTSAAATPGLFG
ATSAAATTPSIFGATSAAATTPSLFGAATSAASTPSLFSGASTGFSFGSSASGSTSTTAA
ASAPSFGFSFSSGAAASSTASTTASSQALGFGGATGSSLFGSTTSAPLFSSSSTSSPAPA
ATTTPSFGFSASPATASAPSFGFTPSTASSTTGNTAASLFSSASSAPTFAFAKSTSATPT
TPVSSPANSLSLATSQASPAPSLFSNTSAAGSSSTATSGFSFGSSSAASTLTIASISATG
ASTAPSATSASATSGSLFPAASTSGFSFSVAPSSSSAAAATATTTTVTSASTSAGMTTTS
PLTGTIGFPSFSVQTTTPASTSSPTLSLGLSTTTASTSATTTSTSQATSSAVQASSTGPA
TSTAITPASSQAPKLPSEIVGKSVEEIIRDWNNELQDRTVKFRKHATAIAEWDKRILQNR
NVLIKLEAEVAKVVETQTSLERQLELIETHQREVDNALQGMEEEAERIFQDERALLRGDE
AASARDTMYEQAEVVEHELQHMTEQVKSIIQTMNATQGGELQASDSMTPFDVAVRILDNQ
LRSLMWIDEKVNEFSGRIQRLPNNSASSERDSGIPRFWLS
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctccttcggtttcggcggctccgcggccgcgggctccaccgcctcctccccc
ttctccttctcctccaccccatccgccttctccttctcccagccggcggcggcctcctcc
cccgcccccgccttcggctcatctctcttctcatcctccgccgccgcttcctctgcccct
actttcggctcctccctgtttggggcctcgtccgccgccgcgcccgcctccactgcagcc
tcccctttcggcttcggatccaccggattctcgttcgggcaatccaccgcagccgcctca
tcggccgcgccggccccatcccttttcggtgcaacggccgccgcatcccccgccggaaca
acccctagcatattcggcgctgccacctccgccgcaagcagccccggcctcttcggcgct
gcctctgcccccgcaagcagcccgggcctcttcggcgcgtccgccgccggctctgcgacg
tctactccgggcctgttcggcgctaccacctccgcggcagccactccgggcctatttggg
gccacctccgccgcggcgaccacaccgagcatattcggggccacttccgccgctgcgacg
acacctagtctgttcggcgccgccacctcggctgcgtccacgccaagcctcttttccgga
gcctccacgggcttcagctttggctcatcggcgtccggctccaccagtaccacggccgcc
gcctcggcaccatcattcggcttctcgttcagctcgggggcggccgcgtcgagcactgct
tccaccactgcatcatcacaggctttagggtttggaggcgccactggctcgtcgctgttc
ggatctaccacctctgcgccactcttcagcagcagcagcacctcttctccagccccagct
gcaaccacgacaccatcctttggcttctctgcctcgccagcaacagcatccgccccgtcc
tttggttttacgccgtcaacagcaagctcgacgacggggaacacggctgcttccttgttc
tcttctgcttcctcggctcctacctttgcttttgctaagagcacatccgccactcctacc
actccagtgtcctcgcctgccaacagcctctccttggccacttcgcaggcttcacctgca
ccctcgctattctctaataccagtgcagcaggtagttcatctaccgctacatctggcttc
tcctttggttcatcttcggcagcttctacactaactatagcttctatctctgcaactggt
gcatccactgcgccatcagctacttcagcttctgcgacatcggggtcattgttccctgct
gcttctactagtggtttcagtttttcagtagcaccatcatcgtcatcagcagcggcagca
acagccactaccaccactgtcacaagtgcatctacgtctgcaggcatgaccactacctct
ccattgactggaacaatagggtttcctagttttagtgttcaaacaaccacaccagcttct
acctcatctccaacactgtcacttggcctttctactacaactgctagcacatcagccacc
accaccagcacaagccaggcaacttcctcagctgttcaagctagcagcacaggtcctgct
acttctacagctatcactccagcatcttcccaagcacctaagcttccatcagaaatcgtt
ggcaaaagtgttgaggagattattagggactggaacaatgagcttcaagaccgtactgtg
aagttcaggaaacatgcaactgcaatagctgaatgggacaagagaattctgcaaaataga
aatgttcttatcaagcttgaggctgaggtggcaaaagttgttgaaacacaaacaagcttg
gaacgccaacttgagttgatagaaactcatcagcgagaggtagacaacgctctccagggc
atggaggaggaagctgaacgcatattccaggatgaacgtgcattacttcgtggagatgag
gctgcttcagcaagagatacaatgtatgaacaagcagaagttgtggagcatgaattgcaa
catatgacagaacaagtaaaatccatcattcagactatgaatgctactcagggtggtgaa
cttcaggcctctgatagtatgacaccatttgatgttgctgtccggatactggataatcaa
ctgcggtccttgatgtggattgatgagaaggttaacgagttctctggcagaatacagagg
ctgcctaacaacagtgcttcaagtgaacgtgactccgggattcccaggttttggttaagc
tga
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