KEGG   Panicum virgatum (switchgrass): 120673317
Entry
120673317         CDS       T07260                                 
Name
(RefSeq) nuclear pore complex protein NUP62-like isoform X1
  KO
K14306  nuclear pore complex protein Nup62
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    120673317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120673317
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     120673317
SSDB
Motif
Pfam: Nsp1_C Nucleoporin_FG COG3_N Flagellar_rod SGT1
Other DBs
NCBI-GeneID: 120673317
NCBI-ProteinID: XP_039810030
LinkDB
Position
5N:complement(64359976..64369781)
AA seq 760 aa
MATSFGFGGSAAAGSTASSPFSFSSTPSAFSFSQPAAASSPAPAFGSSLFSSSAAASSAP
TFGSSLFGASSAAAPASTAASPFGFGSTGFSFGQSTAAASSAAPAPSLFGATAAASPAGT
TPSIFGAATSAASSPGLFGAASAPASSPGLFGASAAGSATSTPGLFGATTSAAATPGLFG
ATSAAATTPSIFGATSAAATTPSLFGAATSAASTPSLFSGASTGFSFGSSASGSTSTTAA
ASAPSFGFSFSSGAAASSTASTTASSQALGFGGATGSSLFGSTTSAPLFSSSSTSSPAPA
ATTTPSFGFSASPATASAPSFGFTPSTASSTTGNTAASLFSSASSAPTFAFAKSTSATPT
TPVSSPANSLSLATSQASPAPSLFSNTSAAGSSSTATSGFSFGSSSAASTLTIASISATG
ASTAPSATSASATSGSLFPAASTSGFSFSVAPSSSSAAAATATTTTVTSASTSAGMTTTS
PLTGTIGFPSFSVQTTTPASTSSPTLSLGLSTTTASTSATTTSTSQATSSAVQASSTGPA
TSTAITPASSQAPKLPSEIVGKSVEEIIRDWNNELQDRTVKFRKHATAIAEWDKRILQNR
NVLIKLEAEVAKVVETQTSLERQLELIETHQREVDNALQGMEEEAERIFQDERALLRGDE
AASARDTMYEQAEVVEHELQHMTEQVKSIIQTMNATQGGELQASDSMTPFDVAVRILDNQ
LRSLMWIDEKVNEFSGRIQRLPNNSASSERDSGIPRFWLS
NT seq 2283 nt   +upstreamnt  +downstreamnt
atggcgacctccttcggtttcggcggctccgcggccgcgggctccaccgcctcctccccc
ttctccttctcctccaccccatccgccttctccttctcccagccggcggcggcctcctcc
cccgcccccgccttcggctcatctctcttctcatcctccgccgccgcttcctctgcccct
actttcggctcctccctgtttggggcctcgtccgccgccgcgcccgcctccactgcagcc
tcccctttcggcttcggatccaccggattctcgttcgggcaatccaccgcagccgcctca
tcggccgcgccggccccatcccttttcggtgcaacggccgccgcatcccccgccggaaca
acccctagcatattcggcgctgccacctccgccgcaagcagccccggcctcttcggcgct
gcctctgcccccgcaagcagcccgggcctcttcggcgcgtccgccgccggctctgcgacg
tctactccgggcctgttcggcgctaccacctccgcggcagccactccgggcctatttggg
gccacctccgccgcggcgaccacaccgagcatattcggggccacttccgccgctgcgacg
acacctagtctgttcggcgccgccacctcggctgcgtccacgccaagcctcttttccgga
gcctccacgggcttcagctttggctcatcggcgtccggctccaccagtaccacggccgcc
gcctcggcaccatcattcggcttctcgttcagctcgggggcggccgcgtcgagcactgct
tccaccactgcatcatcacaggctttagggtttggaggcgccactggctcgtcgctgttc
ggatctaccacctctgcgccactcttcagcagcagcagcacctcttctccagccccagct
gcaaccacgacaccatcctttggcttctctgcctcgccagcaacagcatccgccccgtcc
tttggttttacgccgtcaacagcaagctcgacgacggggaacacggctgcttccttgttc
tcttctgcttcctcggctcctacctttgcttttgctaagagcacatccgccactcctacc
actccagtgtcctcgcctgccaacagcctctccttggccacttcgcaggcttcacctgca
ccctcgctattctctaataccagtgcagcaggtagttcatctaccgctacatctggcttc
tcctttggttcatcttcggcagcttctacactaactatagcttctatctctgcaactggt
gcatccactgcgccatcagctacttcagcttctgcgacatcggggtcattgttccctgct
gcttctactagtggtttcagtttttcagtagcaccatcatcgtcatcagcagcggcagca
acagccactaccaccactgtcacaagtgcatctacgtctgcaggcatgaccactacctct
ccattgactggaacaatagggtttcctagttttagtgttcaaacaaccacaccagcttct
acctcatctccaacactgtcacttggcctttctactacaactgctagcacatcagccacc
accaccagcacaagccaggcaacttcctcagctgttcaagctagcagcacaggtcctgct
acttctacagctatcactccagcatcttcccaagcacctaagcttccatcagaaatcgtt
ggcaaaagtgttgaggagattattagggactggaacaatgagcttcaagaccgtactgtg
aagttcaggaaacatgcaactgcaatagctgaatgggacaagagaattctgcaaaataga
aatgttcttatcaagcttgaggctgaggtggcaaaagttgttgaaacacaaacaagcttg
gaacgccaacttgagttgatagaaactcatcagcgagaggtagacaacgctctccagggc
atggaggaggaagctgaacgcatattccaggatgaacgtgcattacttcgtggagatgag
gctgcttcagcaagagatacaatgtatgaacaagcagaagttgtggagcatgaattgcaa
catatgacagaacaagtaaaatccatcattcagactatgaatgctactcagggtggtgaa
cttcaggcctctgatagtatgacaccatttgatgttgctgtccggatactggataatcaa
ctgcggtccttgatgtggattgatgagaaggttaacgagttctctggcagaatacagagg
ctgcctaacaacagtgcttcaagtgaacgtgactccgggattcccaggttttggttaagc
tga

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