KEGG   Panicum virgatum (switchgrass): 120673338
Entry
120673338         CDS       T07260                                 
Name
(RefSeq) LEC14B protein-like isoform X1
  KO
K11801  DDB1- and CUL4-associated factor 11
Organism
pvir  Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120673338
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     120673338
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_EML_2 WD40 WD40_CDC20-Fz WDR55 WD40_WDHD1_1st WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_WDR19_1st Cytochrom_D1 PQQ PROPPIN Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 WDR54
Other DBs
NCBI-GeneID: 120673338
NCBI-ProteinID: XP_039810060
LinkDB
Position
5N:27278474..27306591
AA seq 472 aa
MRWKRKIHHGGPSEQQQVSPLVDEVCAIDEEVSHLCRIKSEPSQRTRASIYAGQKRPVST
FKLLSGRESNCSGMGRFSSADCSYALRKHLPVKGPWCVDDMDSEAYISQFSADGSLLIGG
FRGSHIRVYNSEKNWKVHKDITCKRLRWTISDIALSPDQRFLAYSSLSPTVHIVNVQNAV
RESHANITEIHEGLEFSDDDDEFSFGIFSVKFSKDGRELVVGNNNESICIYDLGANKVTE
RINAHVADVNVVTFADETSDVLYSGSDDSLCKVWDRRCHKKQKPVGVLTGHLDGITFIDS
RGDGHYFISNCKDQTIKLWDLRKMSSTTKECTPKGYEWDYRWMTYPSEARYLKHPYDQSL
ATFRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDQCVYIYDVATGKVVEKLRWHGSIIRD
CSWHPYLPTLVSSSWDGYLVRWEATEDGRDPSMLKTWKQRMHPEGYTVSFVL
NT seq 1419 nt   +upstreamnt  +downstreamnt
atgcggtggaaacgaaagatacatcatggaggaccatctgaacaacaacaggtcagtcca
cttgtggatgaagtatgtgccattgacgaggaggtttcccatctttgtagaattaaatct
gaaccaagtcagagaactcgtgcatccatttatgctggccagaagaggcctgtctcaaca
ttcaagttattatcagggagagaatcaaattgctcggggatgggcagattctcttcagct
gattgctcttatgctcttcggaaacacctaccagtgaaaggcccatggtgtgtggatgac
atggatagtgaagcttacatctcacagttctctgcagatggttcacttctaattggtggg
ttccggggaagccacatcagagtctacaactctgaaaaaaattggaaggttcataaagat
ataacctgcaaacgtctgcgctggacaatttcagatattgccctctcacctgatcaacga
ttcctggcttattccagtttgtcgcctactgttcacatagtaaatgtccagaatgctgta
agggaatcacatgctaacattacagaaattcatgagggtctggagttttctgacgatgat
gacgaattctcctttgggatattctctgtaaaattttcaaaagatgggcgagaacttgtt
gtaggaaacaacaatgaatcaatatgtatttatgatcttggagcaaacaaagtaacagaa
cgcattaatgcacatgtggctgatgtcaatgtggtcaccttcgctgatgaaacaagtgat
gtcttgtactctggaagtgatgatagcctttgtaaggtttgggataggcgctgccacaag
aaacaaaagccagtaggtgttctgaccggtcatttagatgggattacatttattgatagc
cgtggagatgggcactattttatctcaaactgcaaggatcagactattaaattatgggat
ctcaggaaaatgtcttccactacaaaagagtgcacaccaaaagggtatgaatgggattac
agatggatgacatacccgtcagaagcccgatatttgaagcatccatatgatcagtcacta
gccacattcagaggccattctgtgttgcgcacacttattcgttgttatttttccccaatg
cacagcacgggtcagaggtacatatacacaggatccagtgaccaatgtgtctatatttat
gatgtggcgacaggtaaggttgttgaaaaactgagatggcacgggtcgatcatcagagac
tgctcatggcacccgtacctccccacacttgtcagctcttcttgggacggctatttggtc
cggtgggaggcaacagaggatggcagagacccctccatgctcaagacatggaagcagagg
atgcatccagaaggatacacagtgtcgtttgtcctttag

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