Panicum virgatum (switchgrass): 120673339
Help
Entry
120673339 CDS
T07260
Name
(RefSeq) nuclear pore complex protein NUP98B-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120673339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120673339
03036 Chromosome and associated proteins [BR:
pvir03036
]
120673339
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120673339
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120673339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
120673339
NCBI-ProteinID:
XP_039810065
LinkDB
All DBs
Position
5N:27326482..27335243
Genome browser
AA seq
660 aa
AA seq
DB search
MMGSSSSWSAQTFGSSSSCVGAGFGQTVGSVSSTPWATFPWPSPTFMVSHTPPSGSPCCN
FMGVSEQGSRVCAYAPTAVDGPSNFYQIQSISAMLVNCNKSHEELRHEDYERGDRGGDSL
QKSINPTPIFPVFSSPSFGLSCSSTPAFHFEAHDSSHCSISGTVSPSFARARPFPESTEH
PPAELLPSTRGSTFSSHPFCAVREKKSSNPFWLPSAQSSFSSGDLQSLTQGHSSYTPGLP
FYHYLPSKLASMGITPPLSHTEFLKNPSTYCPSSYQSPFTAQVGGAHSASASTQSMTTAT
LPCPHFATSTSVPTMCRDNIFSNSAGALNTDLAEATSTQQGTFGQNFPTTYTQPGKTPLI
GSSIAHSKPALSSDAHCTSVNLDYPNNTLELHLPVNVRLLRIHFSSSNDGAGISQVHSGH
VAKSTEAPISLSIYPGENHELIIQSVARPAKDQMGKQSSSTGGSDPSKVHNSIGRPPSKS
AGNQEGSNGDAHSIQKSLAAPERQVITRSVLPRLYNADYYTVPSIVELAVNESEEPGYCS
RVPHFTVGRHGYGSVRFDGETDVRKLDIASIVEFNNREILVYRDESNTPPVGQGLNKPAE
VTLLNVKCIDQKTGLQFTGGPTVDRYKETLVQWTKEHDAEFVSFDPMKGEWKFKVKNFSQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgatgggctcttcttcatcttggtctgcccaaacctttgggtcctcttcatcttgtgtt
ggcgcaggctttgggcaaaccgtgggctccgtctcctccactccatgggctaccttccct
tggccttctccaacctttatggtgtcacatacacctccttcagggtccccatgctgtaat
tttatgggggtatctgaacagggcagcagggtatgtgcttatgcgccaaccgctgttgat
ggtccttctaatttttatcagattcaatcgatttcggcaatgctggtaaactgcaacaag
tctcatgaagagcttcgacacgaagattatgagagaggggacagaggaggtgacagtctg
cagaaaagcattaatccaactcctatatttcctgtgttctcatcaccatcatttggttta
tcctgttcaagtacaccagcatttcactttgaggcccacgactcatctcattgctccatt
tcaggtactgtttcaccatcatttgcacgtgcacgtccatttccagagtccactgagcac
ccccctgcagaattactgccctcaacacgaggctccaccttcagttcccacccattctgc
gccgttcgagaaaaaaaaagttccaacccattctggctcccatctgctcagtcatcattt
tcatctggagatttgcaatccttaacacaaggtcatagttcttacactcctggactgcca
ttttatcattacctgccctcaaagctagcatccatgggaataacaccacctctatcacac
actgagtttctaaagaatccctccacctattgtcctagctcataccagtcaccttttact
gcacaagtaggaggtgcacattcagcttcagcatcaacacaatctatgaccactgcaaca
ttaccgtgcccccattttgcaacctccacgtctgtacctactatgtgtcgggacaatata
ttcagcaactcagcaggtgcattaaatacagatttagcagaagcaacttctactcagcag
ggtacattcggtcaaaacttccccacaacatatactcagcctggaaaaactccattgatt
ggttcttcaattgcccattcaaaaccagctctatcttcagatgctcattgtactagcgtc
aatcttgattatcccaataatactttagagttgcatcttccggtcaatgtcagattatta
cgcattcatttttcgtcaagcaatgatggcgctggaatttcacaggttcattctggtcat
gttgctaaatctacagaagcacctatttctctatctatctatcctggggagaatcatgag
ctgattatccaatcggttgcgagacctgctaaggatcaaatgggcaaacagtctagttca
acgggtggatctgatcccagcaaagttcacaatagcattggtcgtccaccatccaaatct
gctgggaatcaggaggggagcaacggtgatgcccactcgatccagaaatcattagctgca
ccagaacgtcaagtgatcaccaggagtgtgctgcctcggctctacaatgcagattactac
actgtgccgtcaattgtggaacttgccgtgaacgagagcgaagagccaggttactgctcc
cgagtgccgcacttcactgtaggcaggcatggctatggcagcgtcaggtttgatggggag
actgatgtgcggaagctcgatatcgcatcaattgtggagtttaacaaccgtgagatcctt
gtatacagagatgagagcaacacgccacctgttgggcagggattgaacaaacctgcagag
gtcactctcctgaacgtgaagtgcatcgaccagaagactgggttgcagttcacagggggc
ccgacggtcgacaggtacaaggagaccctggttcagtggaccaaggagcacgacgccgag
ttcgtgtcctttgacccgatgaagggggagtggaagttcaaggtcaagaatttcagccag
tag
DBGET
integrated database retrieval system
