KEGG   Panicum virgatum (switchgrass): 120673366
Entry
120673366         CDS       T07260                                 
Name
(RefSeq) RNA-binding protein Y14A-like
  KO
K12876  RNA-binding protein 8A
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03013  Nucleocytoplasmic transport
pvir03015  mRNA surveillance pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120673366
  09122 Translation
   03013 Nucleocytoplasmic transport
    120673366
   03015 mRNA surveillance pathway
    120673366
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120673366
   03041 Spliceosome [BR:pvir03041]
    120673366
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     120673366
Spliceosome [BR:pvir03041]
 Complex C
  Other components
   EJC/TREX
    120673366
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_7 RRM_5
Other DBs
NCBI-GeneID: 120673366
NCBI-ProteinID: XP_039810103
LinkDB
Position
5N:complement(28854110..28862573)
AA seq 192 aa
MAAANAGDVEVVDFDSDDDDLMDDDAPEANPAPAAPRLRSTIAAGGDSAAARKTKGRGFR
EEPSSSRPLAGRADFDSLGSDDGPGPLRSIEGWIILVTGVHEEAQEDDLHNAFREFGQVM
NLHLNLDRRTGFVKGYALIEYESFDEAQAAIKAMDGTELVTQIINVDWAFSSGPVKRRNV
RRRSRSPARRRY
NT seq 579 nt   +upstreamnt  +downstreamnt
atggcggcggcgaatgctggggacgtggaggtggtcgacttcgactccgatgacgacgac
ctcatggacgacgacgcccccgaggccaacccggccccggccgccccccgcctccgctcc
accatcgccgccggcggggactccgccgccgcgcgcaagaccaagggccgcggattccgc
gaggagccttcctcctcgcgccccctagccggccgcgccgatttcgattccctcggctcc
gacgacggccctggacccctcagatctattgaggggtggattattttggtaaccggcgtc
catgaagaagcacaggaggatgacctacataatgctttccgggaatttgggcaggtcatg
aacctgcacttgaatttagatcgtcgtactgggtttgtcaaaggatacgctttgattgaa
tatgaaagctttgacgaagctcaggctgcaataaaagcaatggacggaactgagcttgtt
acacagataataaatgttgactgggcatttagtagtggcccagtcaaacgaagaaatgtt
cgcaggagatctaggagccctgccaggaggaggtattga

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