Panicum virgatum (switchgrass): 120673387
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Entry
120673387 CDS
T07260
Name
(RefSeq) long chain acyl-CoA synthetase 8-like
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00061
Fatty acid biosynthesis
pvir00071
Fatty acid degradation
pvir01100
Metabolic pathways
pvir01212
Fatty acid metabolism
pvir04146
Peroxisome
Module
pvir_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
120673387
00071 Fatty acid degradation
120673387
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
120673387
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pvir01004
]
120673387
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pvir04147
]
120673387
Enzymes [BR:
pvir01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
120673387
Lipid biosynthesis proteins [BR:
pvir01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
120673387
Exosome [BR:
pvir04147
]
Exosomal proteins
Exosomal proteins of breast milk
120673387
Exosomal proteins of breast cancer cells
120673387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Kelch_2
Motif
Other DBs
NCBI-GeneID:
120673387
NCBI-ProteinID:
XP_039810131
LinkDB
All DBs
Position
2K:complement(32383968..32391956)
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AA seq
727 aa
AA seq
DB search
MGEVTENNNSDMSVLQRIATSSVPLLKDYGLNGVVGAVLLAVVIPLLLTSMFGKKTKKRA
VQADVGGEAGLAMRNSRFSSLVQVPWEGATTMAALFEMASKKYSQRRCLGTRKLINREFV
EPADGRKFEKLHLGEYQWDTYAEAFNRACNFASGLIKMGHKLDSHAAIFSDTRAEWIIAA
QGCFRQNLTVVTIYASLGEDALVHSLNETQVSTLICDSKQLKKLPAISSKLQSLRHIIYI
EDEPVDAETLNQMNLWTTLSFTEVEELGRTSHIDARLPSSSDTAVIMYTSGSTGLPKGVM
ITHGNMVATTAAVMTIVPNLGMDDVYLAYLPLAHVFELAAETVMLASGTSIGYGSALTMT
DTSNKIKKGTKGDVSVLKPTLMISVPAILDRIRDAVFKKVGEKGGLTKKLFDFAYNRNLA
AIEGSWFGSWAPERMIWDNIIFKPIRAMLGGRVRFVLCGGAPLSSDTQRFMNICLGVPVG
QGYGLTETCAGAAFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYTISDSPMPRGEVVVGG
YSITKGYYNNDAKTNEVYKVDEKSMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYV
SLGKVESALTTSNYVDSIMVYADPFHNYCVALVVPSHQALEKWAQDSGINYKDFEELCQN
DQAIKEVQQSLSKAAKAARLEKFEIPAKILLLPEPWTPESGLVTAALKLKREQIKTKFKD
DLNKLHH
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagttactgaaaataataattcagacatgtctgttctacaaagaattgctacg
agcagcgtgccactgttgaaagactatggtctgaatggagttgttggtgctgtgcttctg
gctgtagttattcctttattgcttacctcaatgtttggcaaaaagacaaagaaaagggca
gtgcaagctgatgtgggtggagaggcaggacttgccatgcgaaacagtagattttcatcc
ttagttcaagtcccatgggagggtgccaccacaatggcagctctattcgagatggccagc
aaaaagtactctcaacggaggtgtcttggcacaagaaagctaattaatagggaatttgtg
gagcctgctgatggtaggaagtttgagaaattgcatcttggagaatatcaatgggatacc
tatgcagaagcttttaatcgtgcatgtaattttgcttctggacttatcaagatgggccac
aaactagatagtcatgcagcaatattttctgatacaagagctgagtggatcattgctgcc
cagggatgcttccgacaaaatttgacggttgtaacaatatatgcttctcttggtgaggat
gcattggtgcattcactgaatgagacacaagtttcaactctgatatgtgattcgaagcaa
cttaagaagctacctgcaatcagctctaaattgcaaagtcttagacatattatctatatt
gaggatgaacctgttgatgcggagacactgaatcaaatgaatctttggacaacattgtct
ttcactgaagtagaggagctgggcagaacatcacacattgatgctaggttaccttcaagc
tctgatactgcagttatcatgtatacaagtggaagtactggtcttcccaagggtgtaatg
atcacgcatggcaacatggtggccacaactgcagcagtcatgacaatcgtcccaaacctt
ggcatggacgatgtttatttggcttaccttccattggctcatgtctttgagctagcagca
gagactgtcatgttggcttctggtacttctattggatatggttcagctctgactatgact
gatacatcgaacaagattaagaaggggacaaagggagatgtttctgtactgaaacctact
cttatgatctcagttcctgcaattttggatcgtatcagagatgcggtgtttaagaaggtt
ggtgagaagggtggcctgacaaaaaaactttttgattttgcatataatcgaaatctagca
gcaattgaggggagttggtttggatcttgggcaccagagaggatgatatgggataacatt
atttttaaaccaattcgggcaatgcttggaggacgtgtaagatttgttctttgtggtggt
gcacctctatcaagtgacacacagcgatttatgaatatatgtctaggtgtcccagtaggt
caaggatatggtttgactgaaacttgtgccggagcagctttctctgaatgggatgacaca
agtgtgggtcgtgttggtccaccacttccttgctgctatgtcaagcttgtgtcatgggaa
gaaggtggttatacgatttctgattctccgatgccgagaggagaggtcgtggttggtggt
tacagtataacgaaaggttattacaacaatgatgcaaagacgaatgaagtatacaaggtt
gatgagaagagcatgcgctggttctacactggtgatattggtcagttccatcctgatggg
tgccttgagataattgacaggaaaaaggatatagtaaaacttcagcatggagaatatgtg
tctcttggcaaggttgaatcggctctaacaactagcaattatgtggatagcatcatggtt
tatgccgatccatttcataattattgtgttgccctggttgttccgtcacaccaggctctg
gagaagtgggcacaagattcagggataaattacaaagactttgaagagctttgccaaaat
gatcaagcaattaaggaggttcagcaatccttatcaaaggcagcaaaagcagctaggctt
gagaaattcgagataccagcaaagattttgttgctacccgaaccatggactccagagtct
gggctagtgacagcagcacttaaactgaagagggaacagataaagaccaaattcaaggat
gatttgaacaagctccatcactga
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