KEGG   Panicum virgatum (switchgrass): 120673433
Entry
120673433         CDS       T07260                                 
Name
(RefSeq) F-box protein SKP2A-like
  KO
K03875  F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    120673433
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pvir04121]
    120673433
Ubiquitin system [BR:pvir04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     120673433
SSDB
Motif
Pfam: LRR_6 LRR_4 LRR_At5g56370 F-box-like LRR_8 F-box
Other DBs
NCBI-GeneID: 120673433
NCBI-ProteinID: XP_039810194
LinkDB
Position
5N:complement(66039017..66042791)
AA seq 377 aa
MDSVKPLSGLSNSFDTLMVSGGVEIRQAQNGGTETSLTDWKDLPMELLLRIMSIVGDDRM
VIVASGVCTGWRDALGWGVANLSLSWCRDHMNDLVISLAHKFTKLQVLSLRQIKPQLEDS
GVEAVAKYCHDLRELDLSRSFRLSDWSLYALAHGCPHLTRLNISGCSNFSDAALVFLGSQ
CKSLKCLNLCGCVRAASDRALQAIACNCGQLQSLNLGWCDSITDKGVTSLASGCPELRAV
DLCGCVLITDESVVALANGCPHLRFLGLYYCQNITDRAMYSLAANGRVRSQGRGWDAARS
GGGSNDRDGLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLNISGCLSLTSVHCAC
ALHPHRAGRAILSNHAY
NT seq 1134 nt   +upstreamnt  +downstreamnt
atggatagtgtgaagccactgagcggattgagcaattcgttcgatactcttatggtttct
ggtggtgtcgagattaggcaggctcagaatggtggcactgaaaccagcttgacagattgg
aaagacctccccatggagctgctcctgcggattatgtcaatagttggagacgataggatg
gtcatcgtggcgtccggtgtatgcacaggatggcgcgatgcgttaggttggggagttgca
aatctttcactctcatggtgccgagatcacatgaatgacttagtgatatccctggctcac
aaattcacgaagctgcaagttctatctctacggcagatcaagcctcagcttgaagacagc
ggcgttgaggctgtggccaagtactgtcatgatctgcgcgagctggatctcagcagaagc
tttcggcttagtgactggtccttgtatgctctggctcatgggtgccctcacctcacaagg
ctcaacatcagcgggtgctccaatttcagcgacgctgctttagtgttcctcggtagccag
tgcaagagcctaaaatgcctgaatctgtgcgggtgtgttagggcagcttctgacagagca
cttcaggccattgcctgtaactgcggccagctgcaatccttgaacctgggctggtgcgat
agcatcactgacaaaggagtgaccagcttggcgtcagggtgccctgaactcagggctgtg
gacttgtgtggttgtgttctcataacagatgagagcgtggttgcgctggcgaacggctgc
cctcacttgcggttcctggggctgtactactgccagaacatcacggaccgcgccatgtac
tcgctggccgcgaacggccgcgtgaggagccagggccggggctgggacgctgcgaggagc
ggcggcggcagcaatgaccgggacggcctggcgagcctgaacatcagccagtgcacggcg
ctgactccgcctgcagtgcaggcggtgtgcgactcgttcccggcgctgcacacgtgcccg
gagcggcactcgctcaacatcagcggctgcctcagcctcacctccgtgcactgcgcctgc
gcgctccacccgcaccgcgccgggcgagccatcctctccaaccacgcctactga

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