Panicum virgatum (switchgrass): 120673433
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Entry
120673433 CDS
T07260
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120673433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvir04121
]
120673433
Ubiquitin system [BR:
pvir04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120673433
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GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
LRR_8
F-box
Motif
Other DBs
NCBI-GeneID:
120673433
NCBI-ProteinID:
XP_039810194
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Position
5N:complement(66039017..66042791)
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AA seq
377 aa
AA seq
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MDSVKPLSGLSNSFDTLMVSGGVEIRQAQNGGTETSLTDWKDLPMELLLRIMSIVGDDRM
VIVASGVCTGWRDALGWGVANLSLSWCRDHMNDLVISLAHKFTKLQVLSLRQIKPQLEDS
GVEAVAKYCHDLRELDLSRSFRLSDWSLYALAHGCPHLTRLNISGCSNFSDAALVFLGSQ
CKSLKCLNLCGCVRAASDRALQAIACNCGQLQSLNLGWCDSITDKGVTSLASGCPELRAV
DLCGCVLITDESVVALANGCPHLRFLGLYYCQNITDRAMYSLAANGRVRSQGRGWDAARS
GGGSNDRDGLASLNISQCTALTPPAVQAVCDSFPALHTCPERHSLNISGCLSLTSVHCAC
ALHPHRAGRAILSNHAY
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgtgaagccactgagcggattgagcaattcgttcgatactcttatggtttct
ggtggtgtcgagattaggcaggctcagaatggtggcactgaaaccagcttgacagattgg
aaagacctccccatggagctgctcctgcggattatgtcaatagttggagacgataggatg
gtcatcgtggcgtccggtgtatgcacaggatggcgcgatgcgttaggttggggagttgca
aatctttcactctcatggtgccgagatcacatgaatgacttagtgatatccctggctcac
aaattcacgaagctgcaagttctatctctacggcagatcaagcctcagcttgaagacagc
ggcgttgaggctgtggccaagtactgtcatgatctgcgcgagctggatctcagcagaagc
tttcggcttagtgactggtccttgtatgctctggctcatgggtgccctcacctcacaagg
ctcaacatcagcgggtgctccaatttcagcgacgctgctttagtgttcctcggtagccag
tgcaagagcctaaaatgcctgaatctgtgcgggtgtgttagggcagcttctgacagagca
cttcaggccattgcctgtaactgcggccagctgcaatccttgaacctgggctggtgcgat
agcatcactgacaaaggagtgaccagcttggcgtcagggtgccctgaactcagggctgtg
gacttgtgtggttgtgttctcataacagatgagagcgtggttgcgctggcgaacggctgc
cctcacttgcggttcctggggctgtactactgccagaacatcacggaccgcgccatgtac
tcgctggccgcgaacggccgcgtgaggagccagggccggggctgggacgctgcgaggagc
ggcggcggcagcaatgaccgggacggcctggcgagcctgaacatcagccagtgcacggcg
ctgactccgcctgcagtgcaggcggtgtgcgactcgttcccggcgctgcacacgtgcccg
gagcggcactcgctcaacatcagcggctgcctcagcctcacctccgtgcactgcgcctgc
gcgctccacccgcaccgcgccgggcgagccatcctctccaaccacgcctactga
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