Panicum virgatum (switchgrass): 120673484
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Entry
120673484 CDS
T07260
Name
(RefSeq) transcription factor CSA-like
KO
K09422
transcription factor MYB, plant
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvir03000
]
120673484
Transcription factors [BR:
pvir03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
120673484
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Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
DUF6581
Motif
Other DBs
NCBI-GeneID:
120673484
NCBI-ProteinID:
XP_039810264
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Position
5N:complement(15157517..15159586)
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AA seq
319 aa
AA seq
DB search
MAHEMATFFGGAPPATAAAAALAPFREDQRHQDAGEEVYHVDDVEDGGAGHGHGGGGGQG
KLCARGHWRPAEDAKLKELVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAF
SEEEEERLLAAHRAYGNRWALIARLFPGRTDNAVKNHWHVLMARRQREQSGALRRRKASS
SSSSSPGPAPPQHYAPVVVLHHHHYAGPNPLPFRAGAHGVAAEAVPAPAADTRAYSGAES
EESASTCTTDLSLGSAGAAVPCFHQSTYSGFDAAPRAAAFAPSARSAFSAPSAARRREAP
PSDDKVALPFFDFLGVGAT
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggctcacgagatggccaccttcttcggcggggcgccgccggcgacggcggcggcggcg
gctctggctccgttccgcgaggaccagcggcaccaggacgccggcgaggaggtgtaccac
gtcgacgacgtggaggacggcggcgccggccatggacacggcggcggcggcgggcagggg
aagctctgcgctaggggccactggcgccccgccgaggacgccaagctcaaggagctcgtc
gcgcagtacggcccccagaactggaacctcatcgccgagaagctcgatggccgatcaggg
aagagctgccggctgcggtggttcaaccagctggacccgcggatcaaccggcgggccttc
tccgaggaggaggaggagcgcctcctggcggcgcaccgcgcctacggcaacaggtgggcc
ctcatcgcccgcctcttcccggggcgcaccgacaacgccgtcaagaaccactggcacgtc
ctcatggcgcgccggcagcgcgagcagtccggcgcgctccgccgccgcaaggcgtcctcg
tcgtcctcgtcctcgccgggccccgcgccgccgcagcactacgcgcccgtcgtcgtcctg
caccaccaccactacgccggccccaatccgctgccgttccgcgccggcgcgcacggcgtc
gccgcggaggcggtgcccgcgccggcggcggacacccgcgcgtacagcggcgccgagtcc
gaggagtcggcgtccacctgcaccaccgacctctccctcggctccgccggcgccgccgtc
ccctgcttccaccagagcacgtacagcggcttcgatgcggccccgcgcgccgccgcgttc
gcgccgagcgcgcgctccgccttctccgcgccgtcggcggcgcgccgccgggaggctcct
ccctccgacgacaaggtggcgctgccgttcttcgacttcctgggcgtgggcgcgacatga
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