Panicum virgatum (switchgrass): 120673545
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Entry
120673545 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120673545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvir03041
]
120673545
03009 Ribosome biogenesis [BR:
pvir03009
]
120673545
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120673545
Spliceosome [BR:
pvir03041
]
Complex A
U1 snRNP components
U1 related factors
120673545
Complex B
120673545
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120673545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120673545
NCBI-ProteinID:
XP_039810360
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All DBs
Position
5N:complement(38827768..38832736)
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AA seq
813 aa
AA seq
DB search
MSGGTGSSGRAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNVTQYEKPTRPEDQLP
PPPPPPPLPPPPPRSRDRRERSRSRSRSPPRRDHRDRDRERDRDRRHDEHASSKAAASHR
HPAPAAAAVPDDPSTEAYRRRHEITVTGDNVPPPITSFEAGGFPSEILKEIQRAGFASPT
PIQAQSWPIAMQSQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNSTRNGPTVLVLAPTREL
ATQILDEAVKFGRSARISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSL
KQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHSRQTLMYTATWPKEVRRIADDLLVHPVQ
VTIGSVDELVANSAITQHVEVITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLART
LTRQFSASAIHGDKSQSEREKVLNHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTG
IEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLIKILEGANQKVPRDLEDMASRGGGR
GRKRNRWASRSDWGSSRSELDSRYSGRDASGRSPRGSRGRDDHGGRGRYDAETDGRSHRS
ARGRSRSRSRSDSRSRSPSPKRSRRHEATRSRTKSHSRSRTKSRSRSRSRSYTRNRHASR
SRSRSPVASRRHEKTATVSGSARPNSGHTEHKSPPRSHSGNDHTNHSDHKDDHHMEDGKM
EKVDLDRSPSPQDDKSAPYSPVYNGKASGSMSPNGQPVVDAESVDASEKPDPTSPVRNSK
SRDDEEEGIIDEDGEIAEDDPRSNAAATQNGDN
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggactggctcgtccgggcgtgcggccccgcggtacgcgccggacgacccg
tcgctgcccaagccgtggcgcggcctcgtcgacggcaccaccggctacctttactactgg
aacccggagaccaacgtcacgcagtacgagaagcccacgcgccccgaggaccagctcccg
ccgcccccgcccccgcccccgctgcctcccccgcctccccggagccgcgaccgccgcgag
aggtccagatcccgctcccgcagcccgccccggcgcgaccacagggaccgcgaccgtgaa
cgtgaccgtgacaggcgccacgacgagcacgcgtcgtccaaggcggcggcttcccaccgc
catcctgctccggccgccgccgccgtacccgatgatccgtccaccgaggcgtaccgccgc
cgccacgagatcaccgtcacgggggataacgtgccgcctcccataacttcatttgaggct
ggtggctttccgtcagaaattctcaaggagatacaacgtgctggatttgcaagcccaaca
cctatccaagcccagtcatggccaattgccatgcagagtcaagatgtagtagctatcgcg
aagactggatctgggaaaactcttggatatctacttcctggatttatgcatattaaacgc
ctgcagaacagcacaaggaatggcccgacagtgctagttttagcaccaacaagggaactt
gcaacacagattctggatgaagctgtgaaatttgggagatcagcgagaatttcttgcacg
tgcctgtatggtggtgctcctaaaggtcctcagttgagagatttagatagaggagttgat
gttgttgttgcaacacctggaaggttaaatgacattctagagatgcgaagggtaagcctt
aagcaagtgtcgtatcttgttctggatgaggctgaccgtatgttggacatgggttttgaa
ccacaaatacggaagatagtgaaagagatacctcacagtcgtcaaacccttatgtacact
gctacttggccaaaggaagtccgaaggattgcagatgatcttcttgttcaccctgtccag
gtgacaattggaagtgttgatgaacttgttgctaacagtgctattactcagcatgtggag
gtgataactccatcagaaaagcttcgacgtctggaacaaatattgcgatcccaggattca
ggttcaaaagtattaatattttgtactacgaagaggatgtgcgaccaacttgcaaggacg
ctcaccagacagtttagtgcttcggccattcatggtgacaagtcccaaagcgaaagagag
aaggttctgaatcactttcgatctggacggtctcctattttggttgcaacagatgttgct
gcccgaggtttggacatcaaagatatcagggttgtgatcaactatgacttccccactggt
attgaagactatgttcataggattggcaggacaggaagggctggagcaactggtgtagca
tatacatttttctgtgatcaggactcaaaatatgcttctgaccttatcaaaattctggaa
ggggcaaaccaaaaggtaccccgtgatttagaggacatggcttctcgcggtggtgggcga
ggtaggaagaggaaccgttgggcatcacgctctgactggggtagttctcgttccgaactg
gattctaggtacagtggcagagatgcttctgggagatcaccacgtggcagccgtggaagg
gatgatcatggtggccgtggcaggtatgatgctgaaaccgatgggcgatctcacaggtcc
gctaggggtcgcagtagaagccgtagcagaagtgacagtagaagccgcagcccaagtcct
aaaaggtcacggcgtcatgaggctacccgtagcaggaccaagagtcatagccgaagcagg
acaaagagtcggagcagaagcaggagcaggagctatactagaaaccgccatgctagccgc
agcaggagccgtagccctgttgctagccgtaggcatgagaaaacagccactgtctctggg
tctgctcggcccaactcagggcacacagagcacaaaagccctccaaggtcgcattctggg
aatgaccatacgaaccactctgaccacaaggatgaccatcacatggaagatgggaagatg
gaaaaggttgatcttgatcgctcacccagcccacaagatgacaaatctgctccatatagt
cctgtgtacaatggcaaagccagtggttcgatgagccccaacggtcagccagtggttgat
gctgaatctgttgatgcttcagaaaaacctgaccctacatctcctgtgcgcaacagcaag
agcagagatgatgaagaggaaggtatcatagatgaggatggagagatagctgaggatgat
cctcgatcaaatgctgcagctacacagaatggtgataactga
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