Panicum virgatum (switchgrass): 120673549
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Entry
120673549 CDS
T07260
Name
(RefSeq) AMSH-like ubiquitin thioesterase 3
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120673549
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120673549
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvir04131
]
120673549
04121 Ubiquitin system [BR:
pvir04121
]
120673549
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120673549
Peptidases and inhibitors [BR:
pvir01002
]
Metallo peptidases
Family M67
120673549
Membrane trafficking [BR:
pvir04131
]
Endosome - Lysosome transport
Others
Others
120673549
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
120673549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
120673549
NCBI-ProteinID:
XP_039810372
LinkDB
All DBs
Position
5N:complement(20877476..20883980)
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AA seq
510 aa
AA seq
DB search
MGPPQPARGGPINIEACARPIAVDNRISLPYYFRIAGSLLRQANIYRNEKNILDLYVILL
RYSSLLCETIPKHRDFHAFKLREKAFFDKLSDVIKELESLKPVVQRQVAEHNRGGTVESN
TNSLNGTYATTHRIEQHTPSLYTPQTFVRSANGALQKSFQIGRQVPSLPSVQQDRQMHKQ
FMNLPYPSEETLARHSILGPNGLHGRWNVPITGIKVQYPNNFELTQGDMTSLVPSILNQD
GSLGPSTAPPDSSTNDNEDMKSVLSLDDGRWSVPAEGRTPIPFANMEEELFQLNIKQPSP
PPVLAEVQRPISPSRVADPTPGLPTSGTARFQNFHVPIKLMECFLRVAESNTKRSLETCG
VLAGTLKNRTFYVTTLIIPKQKSTSNTCEATNEEELFEVQDSGSLFTLGWIHTHPTQSCF
LSSIDLHNHYSYQVMLPEAIAIVMAPTDTTRKHGIFHLTDPGGMGVIHDCQERGFHPHKA
PLDGSPIYEQCSHVYMDTDIKFDMIDLRER
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgggcccgccgcagccagccaggggcggccctatcaacatcgaggcgtgcgcgcggccg
atcgccgtcgacaaccgcatcagcctcccctactacttccgcatcgcgggcagcctcctc
cgacaggctaatatatatcggaacgagaaaaacatcctcgacctgtatgtaatcctgctg
agatactcgagtttgttgtgcgagacgataccgaagcatcgcgatttccatgccttcaag
ttgagagaaaaggcgttttttgataaacttagtgatgttatcaaagagcttgagtcattg
aagccagttgtgcagcggcaggttgccgagcataacagaggaggtactgtggaatctaat
actaatagtctaaatggaacctatgctacaactcataggatagagcagcataccccaagc
ttgtatactccacagacatttgtacgtagcgctaatggagcactgcaaaagtccttccaa
attgggagacaagtgccatcattacccagtgtccaacaagataggcagatgcataaacaa
tttatgaacctgccttatccaagtgaagaaacactagctagacattccatattaggacct
aatggtcttcatggccgatggaatgtgcctattacaggaattaaggttcaatatccaaac
aattttgaattaacacaaggtgatatgacaagtttagtgccatccatcttgaaccaagat
ggttcacttggtcccagtacagcacctccagatagctccacaaatgacaatgaagatatg
aaatctgtcctctctcttgatgatggtcgatggtctgtaccagcagaaggacgaacgcca
attccttttgctaatatggaagaagagttgttccaattgaatatcaaacagccttctcct
ccaccagtcctggcagaggtacaaagacctatttctccatcaagagttgctgatccaaca
ccaggacttccgacctcaggaaccgcccgttttcagaactttcatgttccgatcaagttg
atggagtgctttctaagggttgctgaatcaaacaccaaaagaagcctagaaacttgtggt
gttcttgctggtaccctgaaaaacagaactttttatgtgacaacattaattattccaaag
cagaaatcgacatctaatacgtgtgaagctacaaatgaagaagaactatttgaagttcag
gactcaggctcacttttcactcttggttggattcatacacatccaacacagtcctgcttc
ctgtcttccattgatctccacaatcattattcttatcaggtcatgctacctgaagcaatt
gcaatagttatggcacctactgacacaacaagaaaacatggtatatttcatctcacggat
ccaggtggtatgggtgtgatccatgattgccaagagagaggtttccatcctcataaggca
cctctggatggctcgccaatttatgagcagtgctcccatgtctacatggacaccgatata
aagtttgacatgattgatctccgagaacgatga
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