Panicum virgatum (switchgrass): 120673588
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Entry
120673588 CDS
T07260
Name
(RefSeq) protein NEDD1-like
KO
K16547
protein NEDD1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvir03036
]
120673588
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pvir04812
]
120673588
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
120673588
Microtubules and associated factors
gamma-tubulin ring complex
120673588
Cytoskeleton proteins [BR:
pvir04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
120673588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
EIF3I
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_SCAP
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
PROPPIN
Shugoshin_N
PEP5_VPS11_N
bZIP_2
WD40_like
Herpes_BLRF2
Motif
Other DBs
NCBI-GeneID:
120673588
NCBI-ProteinID:
XP_039810439
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All DBs
Position
2K:33017141..33027082
Genome browser
AA seq
773 aa
AA seq
DB search
MGFVDPAAPLLATCGGDTVKLFDVRVESGDPCVLAYTPAPGNPVNAVKWNHTNLIVASAG
DDKKISLWHKKGQNVGQLPTATVDRGDDIEECIYSISFSNKGSRYLCSGGSGHIVRIWDL
QRKRCIKWLSGHTDTITGVMYNCKDEHLASISMKGDLILHNLASGARAAELSDPNGQVLR
VLDYSRNSRHLLVTAGDDGSVHLWDTTAKSPKVSWLKQHSAPTSGVCISPSSDKIIATVG
LDKKLYTLDSSSRRPTHTIPHVAPFSSLAYNDDGTILAAGTNSGRVIFYDVRGKPQPLTI
LRAYNSSEAVTGLCWQRSKPVIVNENSSSEVALLGGTSEESVLMPDPLPSATPTSFSSGG
VTVGLRSSLTPNTSGFLSTSNSSTMEETPYRARPLSGGPLSKLQAPRSNYNLKDDMDVFS
PLVDVQPFTPSSGSWWDEHGSDDAKKDDKPGEKKLSTTRKFSYMEGNDEPHPISDWRSTV
NSRQDFSSVTTTSMPSWKSELSISSPETATGNALPDRLTHRHQLSRFGASAFSTGGLAFT
ALQDSSSAGHSLKGSLTSNILMNLQNKGILSNSHSSLDASSPNLQSSLPSPYGSKAISSV
NPDQPGAAQSSSMWRSTTYTDKMSSSSVFSDGLASAFGSPKSKKMGAETKDELLSSLLSR
QEAATASSSSSPLASNGLGLPQLSNTSSSTDQQGASSFSLQYVQRMLEESLGSVQKSIHE
DVRNLHIELLRQFHMQEMEMSGVLNLVLEKVEGLTKEVQQLRRENQQLRQQLL
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgtggatccggcggcgccgctgctggcgacgtgcggcggcgacacggtgaag
ctcttcgacgttagggtggagtccggcgacccctgcgtcctcgcctacacccccgcgccc
ggcaaccccgtcaacgccgtcaagtggaaccacaccaatctaattgtagcaagcgctggg
gatgataagaagatctcattgtggcataaaaaaggtcaaaatgtaggacagctaccaaca
gccactgttgatcgtggtgacgacatagaggagtgcatttattctatcagttttagcaac
aaaggttctcgatatctttgctctggtgggagtggccatattgtcagaatatgggatttg
cagcggaagagatgtatcaaatggctaagtggtcacactgacacaattactggtgtaatg
tataactgcaaagatgaacatttggcatcgatcagcatgaagggtgatctcattcttcac
aatcttgcttctggagcacgtgctgctgaacttagtgatccaaatggacaagtgttgaga
gtgcttgattattcacgaaacagtagacatttattggtgacagcaggagatgatggttct
gtgcatctttgggatacaactgcaaagtctccgaaggtgtcatggctgaagcaacattct
gcacccacaagtggtgtttgtatctcgccatcaagtgacaagataattgctacagttggc
ctggacaagaagttgtacacattagattcatcgtcaagaagaccaacacacaccattcct
catgtggccccattctcctcgttggcatataatgatgatggtactatattagctgcaggc
acaaatagtggacgtgtgatattctatgatgtccggggaaaacctcagccattgaccatt
cttcgtgcctacaatagctctgaggctgtgacaggtttatgttggcaacggtcgaaacct
gtcattgttaatgagaacagttcttctgaagttgctcttcttgggggaactagtgaagag
tctgttcttatgccagatcccttgccttcggcgacacctacaagtttttcttctggaggg
gtcactgtaggtcttcgttcttctttgacaccaaacacaagtggctttctttcgacatcg
aactcttctaccatggaggaaactccatatagagcacgtccgttatctggaggaccatta
tcaaagctacaggctcctcgtagtaactataatctaaaggatgatatggatgtcttttct
ccacttgttgatgtccagcctttcacaccatctagtggcagctggtgggatgagcatgga
agtgatgatgccaaaaaagatgataaaccaggagaaaagaagttgtcaacaactaggaag
ttttcgtatatggaaggcaatgatgagcctcatccgatctcagattggaggtctactgta
aattcaagacaggacttctcatctgtgactactacatccatgccatcatggaagagtgaa
ctgtctatatcttcgccagagacagccactggaaatgcattaccagataggctaactcac
cgtcaccagctctcacgctttggggcttcagccttttcaacaggtggcttggcttttaca
gccttacaagattcatcttcagctggtcactcgctgaagggttctctaacaagtaacatt
ttaatgaacctacaaaacaagggtatcttaagcaactcacactcttccctggacgcatca
tctcccaatcttcagagttcacttccctcaccctatggttcaaaggctatttcatctgtg
aatcctgatcaaccaggagcagcacaatccagttctatgtggagatcaacaacatatact
gataaaatgagctcatcctctgtttttagtgatgggttagcttcagcgtttggctcacca
aaatcaaagaagatgggagcagaaacaaaagatgagttgctcagtagtcttttgtcaaga
caagaggctgcaactgcctcttcatcctcaagccctctagcaagcaatgggttagggctg
ccacaattgtcaaacacaagttcttcaactgaccaacagggagcttcttccttctcactt
cagtatgtgcagcgcatgcttgaagaatctcttgggtctgttcagaagtccatccatgag
gatgtgagaaatctccacattgaacttttaagacagtttcacatgcaggagatggaaatg
tccggtgtgctgaatttggtcctggagaaggtggaaggcttgacaaaggaggtgcagcaa
ctaagaagggagaaccaacagctccggcagcagcttctataa
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