Panicum virgatum (switchgrass): 120673634
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Entry
120673634 CDS
T07260
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pvir03009
]
120673634
Enzymes [BR:
pvir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120673634
Ribosome biogenesis [BR:
pvir03009
]
Eukaryotic type
Pre-60S particles
Helicases
120673634
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GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Cas3-like_C_2
TEX13B-like_middle
Motif
Other DBs
NCBI-GeneID:
120673634
NCBI-ProteinID:
XP_039810513
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All DBs
Position
5N:6762200..6766268
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AA seq
644 aa
AA seq
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MAASSPAAAAAARGALTEQKFSEMSPALSAEVVEALRSGGFRRCTPVQAATIPHLLSHKD
VAVDAATGSGKTLAFIVPVVEILRRRSSPPKSHEVLAVIVSPTRELSSQIYNVAQPFFAT
LKDVSSILLVGGLDIKAELKRVDEQGANILVGTPGKLCDVMQREDTLDFKNLEILILDEA
DRLLDMGFQKQINFILSKLPKLRRTGLFSATQTKAVAELSKAGLRNPMRVEVKTEAKLTS
KDAGQQELGPSKTPLGLRLEYMICEASKKSSQLVDFLVQNNGKKIMVYFATCACVDYWAV
VLPLLNSLKGSPIIAYHGKMKQRPREKALASFSALSSGILVCTDVAARGLDIPSVDLIVQ
YDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKLRGVPLTERECPSNIEDV
VTQIRSAALEDRNVMEKGLRAFVSFVRAYKEHHCSYIFRWKDLEIGKLAMEYGLLQIPSM
PEVKHHSLSLEGFIPVDDVDVTQIKYKDKAREKQRKKALKRKAEEEAQNPKPEKKRAREK
PEKPKRKKTGKQRQSIQTKEDLDELAHEYRLLKKLKRGDIDEDEYEKLTWFGDSDGEASD
GDASDLDEKKERGNKAQKKLKQRGKDRGGSRKFEGKSKRRSKRR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgtcctcgccggcagcggcggcggccgcacggggcgcgttgacggagcagaag
ttctcggagatgtcccccgcgttatccgcggaggtggtggaggcactacgcagcggcggc
ttccggcgttgcacgccggtgcaggcggcgaccatcccgcacctgctgtcacataaggac
gttgcagtcgacgccgccaccggctccggcaagacccttgccttcatcgttcccgtcgtc
gagatcctccgccgccgctcctccccgcccaagtcccatgaggttcttgctgtcatcgtc
tctcccacgagagaattatcctcgcagatatacaatgtggcgcagcccttcttcgcaaca
ctgaaggacgtgtcgtccatactcctggttggtgggctggacatcaaggcagagctcaag
agagtggacgaacagggtgcaaacatattggtgggcactcccgggaagctttgtgatgtt
atgcagcgagaagacactctagattttaagaatcttgagattttgattctggatgaggct
gataggctcttagacatggggttccagaaacagattaatttcatactttcaaagttgccg
aagcttaggaggactgggttgttctcagctacacagacaaaagctgttgcagaactttcc
aaagcagggttgaggaatcctatgagggttgaggttaagacagaagcaaagctgacaagc
aaagatgctggtcagcaagagcttggtccatccaaaacaccattggggcttcggttggag
tatatgatatgtgaagcatcaaagaagtcatctcagcttgttgatttccttgtacagaat
aatggaaagaaaataatggtatattttgcaacatgtgcttgtgtagattactgggctgtg
gttcttccactgcttaactcactaaaaggttctccaataattgcctaccatgggaagatg
aaacagaggcctcgagagaaagctttggcgtcattctctgctctttcaagtggtattcta
gtctgcactgatgttgcagcaaggggccttgacataccaagtgttgatctgattgtgcag
tatgatccacctcaagatcccaatgttttcatacatagagctggccgaaccgcacgttat
gatcaagaaggagatgctattgtatttctcttaccaaaggaggatacttatgttgagttc
ttgaagcttcgaggtgttcctctcacagaaagggaatgtccctcaaacattgaagatgtt
gtaacacagattagaagcgctgcacttgaagatcgcaatgtcatggagaaaggacttaga
gcatttgtttcattcgttcgagcatacaaggagcaccactgctcttacattttcagatgg
aaagatcttgagattggaaagctagctatggagtatggtttactccagatcccatccatg
ccagaagtgaagcatcattctctttcactggagggatttattcctgttgatgatgttgat
gttacacaaatcaagtacaaggataaagcccgagaaaagcaacgcaagaaggcattgaaa
aggaaagcagaagaggaagctcagaacccaaagccagagaagaagagagctcgggagaag
cctgagaaaccaaagcgaaagaagacaggcaagcagcggcaatccatccaaaccaaggag
gacctggatgagctggcgcatgagtaccggctcttaaagaagctgaagcgtggagacatc
gatgaagacgagtacgagaagctcacctggttcggagactctgatggtgaagcctcggat
ggggacgcgagcgacttggacgagaagaaggagaggggcaacaaggcacaaaagaaactc
aagcagagagggaaggatagaggagggtctaggaaatttgaagggaagagtaaaaggagg
agcaaaaggagatag
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