Panicum virgatum (switchgrass): 120673703
Help
Entry
120673703 CDS
T07260
Name
(RefSeq) uncharacterized protein LOC120673703
KO
K03504
DNA polymerase delta subunit 3
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03030
DNA replication
pvir03410
Base excision repair
pvir03420
Nucleotide excision repair
pvir03430
Mismatch repair
pvir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120673703
03410 Base excision repair
120673703
03420 Nucleotide excision repair
120673703
03430 Mismatch repair
120673703
03440 Homologous recombination
120673703
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pvir01009
]
120673703
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pvir03032
]
120673703
03400 DNA repair and recombination proteins [BR:
pvir03400
]
120673703
Protein phosphatases and associated proteins [BR:
pvir01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120673703
DNA replication proteins [BR:
pvir03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
120673703
DNA repair and recombination proteins [BR:
pvir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
120673703
MMR (mismatch excision repair)
DNA polymerase delta complex
120673703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
120673703
NCBI-ProteinID:
XP_039810607
LinkDB
All DBs
Position
5N:3025084..3030488
Genome browser
AA seq
515 aa
AA seq
DB search
MAGGAVDQSLLDLLPQIHALFSDPLRVISYKWLSRNFSVSSNDAKRLLQEFVDKNGTDLQ
VIYSVSGWLKNNPQNYCVKLTSGPKLEEARQAFKDSCSVQVYSIQACIPKDTAVLWNPEF
VQAEELFNQPFYEDNCLRDNRFCGVLNSFVKRTSSGKHVNSLPPKPVTSATAAAPSKPIV
TPTEQFVTARQQDLPGLSNLKQGAGNKSEKDNSAVLNKAGNAPVVKEPSVAAHANKNKAQ
NGKALPGNGGSLANMWGRASAKPKPPATTNSAAVASVAATADAQICAKEEADADSSDDEQ
GIKYKRGSCCANNKKRRAVFDFSDDEEDDNIARVASPELPKQHSPDPVTETAEDTRVNQK
NLENKDDVPNNVKGCSRGLESEFTSECKTKSVNTMNHSGITLKEKSSEPPVNDTKLNSTA
KPASTSPKRRKVLKTRIDERGREVTEVVWEGEASAGDKTEKNVTTTAASGPTLPSKPQPS
ANSDKSKAPSKAAASKKPAKGGTKQGSIMSFFKKA
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcggggccgtggaccagtcgctgctcgacctgctgccccagatccacgccctc
ttctccgacccgcttcgcgtgatttcatataaatggcttagtcggaacttctctgtatca
tcaaatgatgccaagaggttgcttcaggagtttgtcgacaaaaatggaaccgacctccaa
gtaatatacagtgtgtcagggtggctgaagaacaatccccaaaattactgtgtaaaactc
acttctggcccaaaacttgaagaagcaagacaagcattcaaagattcttgttcggtccag
gtctacagtatccaggcttgtattccaaaagatacagctgtactttggaatcctgaattt
gtgcaggcagaagaacttttcaaccagcctttttatgaagataactgtttgagagataat
aggttttgtggtgttttgaattcttttgtcaagagaacatccagtgggaagcatgtgaat
tcattgccaccaaagcccgtaactagtgctacggcagccgcaccatcaaaacctattgtt
actccaacggagcagtttgttactgctcggcagcaagatttacctggactgtctaatcta
aagcagggagcaggcaataagtctgaaaaggataattccgcagtattaaataaagctggc
aatgctcctgttgtcaaagaaccatcagttgctgcccatgctaacaaaaataaagctcag
aatggcaaggccttgcctggtaatggtggatcgctggctaacatgtggggccgtgcatca
gcgaaaccgaagcctccagctaccactaattctgcagctgtagcaagtgttgcagctact
gctgatgcacaaatatgtgcaaaggaggaagcagacgctgatagcagcgacgatgaacaa
ggaataaagtacaagaggggatcttgctgtgcaaataacaaaaagagaagagcagtattt
gatttttcagatgatgaggaagatgacaatattgcaagggttgcatctcctgagctacca
aaacagcattctccggaccctgttaccgaaactgctgaagacactcgagtaaatcaaaag
aacttggaaaataaagatgatgtaccaaacaatgtgaaaggttgttcgagggggttggag
tctgagttcacttctgaatgtaaaaccaaaagtgtcaatactatgaaccattctgggatt
actttaaaggaaaaaagcagtgaacctccagtcaatgacactaagctgaattccacagct
aagcctgcttccacctcaccgaagagaagaaaggttttgaagacacgcatagatgagcgg
ggaagggaagttactgaggttgtttgggagggtgaagcttctgcaggtgacaagacagag
aagaatgtgaccactactgctgctagcgggccgactcttccaagcaagccacagccatca
gcaaactctgacaagagcaaagctccaagcaaggcagcagccagcaagaaacctgcgaag
ggcggcaccaagcaagggagcatcatgtcattcttcaagaaggcatag
DBGET
integrated database retrieval system
