Panicum virgatum (switchgrass): 120673811
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Entry
120673811 CDS
T07260
Name
(RefSeq) piRNA biogenesis protein EXD1-like isoform X1
KO
K18740
exonuclease 3'-5' domain-containing protein 1
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120673811
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
120673811
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
KH_1
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-GeneID:
120673811
NCBI-ProteinID:
XP_039810755
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Position
5N:complement(40095673..40101533)
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AA seq
335 aa
AA seq
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MASHHSEPFDPAPAADAPADNNPELPSPPYHIVTKPGQLPVEFLEPSAAQKLVIGFDCEG
VDLCRNGALCIMQLAFPDAVYLVDAIEGGKELIEACKPALESDHITKVIHDCKRDSEALY
FQFGIKLHNVMDTQIAYSLIEEQEGKKSHDDYISFVSLLADSRYCGIPYPEKEEVRTLLR
QDPNFWTIRPLSDMMVRAATDDVRFLLNIHEKMMEKLSKVSLWRLSVRSELYCRCFCINN
NQFADWPLLPPVPGDIEADVHVPEVDILSVLDVPPGKMGRVIGRKGSTIMFVKESCNVEI
HIGGAKGPPDRVFIIGPVKEVRKAEAILRGRMLEF
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcctcccaccattccgagcccttcgaccctgcccccgccgccgacgcccccgcagat
aacaacccagaattgccgtccccaccctatcatattgtcaccaaacctggtcaactccca
gtcgagtttcttgaaccctcagctgcccagaagttggtaatcggatttgactgtgaaggt
gttgatctctgtcgtaatggtgctctctgtatcatgcagcttgcatttcctgatgctgtt
tacttagttgatgctattgagggtggaaaagaactcattgaagcttgtaagcccgcactt
gagtctgatcatatcaccaaagttattcatgattgtaaaagagacagcgaggcgttgtat
tttcagtttggcatcaaattgcataatgtgatggatacacagattgcttattctctgata
gaagagcaggaaggaaaaaagagtcatgatgattacatatcttttgtcagccttcttgct
gattcgcggtactgtggcataccatatcctgaaaaggaagaagtgcgtacccttctaagg
caggaccctaacttttggacaattaggcccttgtctgatatgatggttcgagcagccaca
gatgatgtccgcttccttctcaacatccatgagaaaatgatggagaagctaagcaaagta
tctttatggcgtctgtctgttcgcagtgaactatactgcaggtgtttttgcataaacaac
aaccagtttgcagattggccacttcttcctcctgtcccgggtgacattgaagctgatgtt
catgttcctgaagtggatatcctatcagtcttagatgtgcctcctgggaaaatgggacga
gttattggcagaaagggatcaacaataatgtttgtcaaagagtcttgcaacgttgaaatc
catattggtggtgctaagggacctccagacagggtgttcatcattggaccagtgaaggaa
gtcaggaaggctgaggccattctcagaggccgaatgctggagttctag
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